Gene detail information of Glyur000151s00010723 |
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| TAIR | AT4G19970.1 | 1.00E-100 | |
| NR | XP_010919916.1 | 0 | PREDICTED: LOW QUALITY PROTEIN: uncharacterized protein LOC105043887 [Elaeis guineensis] |
| Swissprot | tr|Q3E6Y3|Y1869_ARATH | 5.00E-102 | Uncharacterized protein At1g28695 (Precursor) |
| trEMBL | tr|K7KEB0|K7KEB0_SOYBN | 0 | Uncharacterized protein {ECO:0000313|EnsemblPlants:GLYMA03G25590.2} |
Sequence
| Transcript Sequence |
|---|
| Protein Sequence |
|---|
Location information (JBrowse)
| Scaffold | Start | End | Strand |
|---|---|---|---|
| Scaffold00151 | 31023 | 42441 | + |
Gene family
| Gene family | subfamily |
|---|---|
| Carbohydrate-Active enzymes Family | GT77 |
KEGG pathway
| KO | Enzyme | Enzyme ID | pathway | mapID |
|---|---|---|---|---|
| -- | -- | -- | -- | -- |
Gene Ontology
| Not hits found. |
Pfam domain
| Protein | Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|---|
| Glyur000151s00010723.1 | PF03407.11 | Nucleotid_trans | 82 | 280 | 2.40E-52 |
| Glyur000151s00010723.1 | PF03407.11 | Nucleotid_trans | 419 | 596 | 8.60E-39 |
Expression pattern
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR1783599 | control | 0.558 |
| SRR1783600 | control | 0.550 |
| SRR1783602 | moderate drought stress | 0.626 |
| SRR1811619 | moderate drought stress | 0.512 |
| SRA Experiment | Description | TPM |
|---|---|---|
| DRR006519 | Root Summer glycyrrhizin high producing strain | 0.000 |
| DRR006520 | Root Summer glycyrrhizin high producing strain | 0.000 |
| DRR006521 | Root Winter glycyrrhizin high producing strain | 0.000 |
| DRR006522 | Root Winter glycyrrhizin high producing strain | 0.000 |
| DRR006523 | Root Summer glycyrrhizin low producing strain | 0.000 |
| DRR006524 | Root Summer glycyrrhizin low producing strain | 0.000 |
| DRR006525 | Leaf Summer glycyrrhizin high producing strain | 0.000 |
| DRR006526 | Leaf Summer glycyrrhizin high producing strain | 0.000 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR2867873 | Salt Stress (root) | 2.778 |
| SRR2868004 | Drought Stress (root) | 6.987 |
| SRR2967015 | Control (root) | 6.484 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR9715738 | Leaf | 0.061 |
| SRR9715740 | Leaf | 0.000 |
| SRR9715741 | Leaf | 0.115 |
| SRR9715739 | Root | 0.293 |
| SRR9715742 | Root | 0.439 |
| SRR9715743 | Root | 0.467 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8749027 | MeJA induced 9h | 3.283 |
| SRR8749028 | MeJA induced 9h | 24.360 |
| SRR8749029 | MeJA induced 9h | 4.492 |
| SRR8749030 | Uninduced | 32.756 |
| SRR8749031 | Uninduced | 67.809 |
| SRR8749032 | Uninduced | 27.349 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8400026 | NaCl treatment - Root | 2.920 |
| SRR8400027 | Control - Root | 2.018 |