Gene detail information of Glyur000151s00010719 |
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| TAIR | AT3G10950.1 | 4.00E-45 | Zinc-binding ribosomal protein family protein |
| NR | XP_007209764.1 | 9.13E-60 | hypothetical protein PRUPE_ppa013350mg [Prunus persica] |
| COG | YP_004004387.1 | 9.00E-17 | 50S ribosomal protein L37ae [Methanothermus fervidus DSM 2088] |
| Swissprot | tr|Q9ZRS8|RL37A_PSEMZ | 1.00E-59 | 60S ribosomal protein L37a |
| trEMBL | tr|M5WNW1|M5WNW1_PRUPE | 3.00E-60 | Uncharacterized protein {ECO:0000313|EMBL:EMJ10963.1} |
Sequence
| Transcript Sequence |
|---|
| Protein Sequence |
|---|
Location information (JBrowse)
| Scaffold | Start | End | Strand |
|---|---|---|---|
| Scaffold00151 | 425 | 2089 | - |
Gene family
| Gene family | subfamily |
|---|---|
| -- | -- |
KEGG pathway
| KO | Enzyme | Enzyme ID | pathway | mapID |
|---|---|---|---|---|
| -- | -- | -- | -- | -- |
Gene Ontology
|
Pfam domain
| Protein | Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|---|
| Glyur000151s00010719.1 | PF01780.14 | Ribosomal_L37ae | 2 | 91 | 5.60E-38 |
Expression pattern
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR1783599 | control | 24.419 |
| SRR1783600 | control | 25.172 |
| SRR1783602 | moderate drought stress | 23.239 |
| SRR1811619 | moderate drought stress | 23.918 |
| SRA Experiment | Description | TPM |
|---|---|---|
| DRR006519 | Root Summer glycyrrhizin high producing strain | 129.661 |
| DRR006520 | Root Summer glycyrrhizin high producing strain | 128.266 |
| DRR006521 | Root Winter glycyrrhizin high producing strain | 85.967 |
| DRR006522 | Root Winter glycyrrhizin high producing strain | 85.400 |
| DRR006523 | Root Summer glycyrrhizin low producing strain | 84.182 |
| DRR006524 | Root Summer glycyrrhizin low producing strain | 83.075 |
| DRR006525 | Leaf Summer glycyrrhizin high producing strain | 30.986 |
| DRR006526 | Leaf Summer glycyrrhizin high producing strain | 30.863 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR2867873 | Salt Stress (root) | 345.619 |
| SRR2868004 | Drought Stress (root) | 245.791 |
| SRR2967015 | Control (root) | 198.568 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR9715738 | Leaf | 130.222 |
| SRR9715740 | Leaf | 117.961 |
| SRR9715741 | Leaf | 110.894 |
| SRR9715739 | Root | 154.061 |
| SRR9715742 | Root | 141.972 |
| SRR9715743 | Root | 142.321 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8749027 | MeJA induced 9h | 219.016 |
| SRR8749028 | MeJA induced 9h | 85.101 |
| SRR8749029 | MeJA induced 9h | 160.624 |
| SRR8749030 | Uninduced | 59.392 |
| SRR8749031 | Uninduced | 45.838 |
| SRR8749032 | Uninduced | 58.391 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8400026 | NaCl treatment - Root | 246.155 |
| SRR8400027 | Control - Root | 220.692 |