Gene detail

Gene detail information of Glyur000150s00014601

Functional Annotation

Database	Orthologs	E value	Annotation
TAIR	AT3G51670.1	8.00E-174	SEC14 cytosolic factor family protein / phosphoglyceride transfer family protein
NR	XP_004492509.1	0	PREDICTED: patellin-6-like [Cicer arietinum]
Swissprot	tr\|Q9SCU1\|PATL6_ARATH	0	Patellin-6
trEMBL	tr\|V7B2S5\|V7B2S5_PHAVU	0	Uncharacterized protein {ECO:0000313\|EMBL:ESW12182.1}

Sequence

Transcript Sequence

>Glyur000150s00014601.1
CACTGTCCTCCCATTGTCACACAAACACTAGAGAGACAAAAAATAAAAGCTGTGCTTTAACAGAGAAACAACAACCCCTCCGTGCAAATCAACCTGCATTTTCCATTTCCATGCAGAGATTCCATCTGGGTCTCCCTCAAAGTCCCTATTCAACATCATCAATGTCTCCCTCTCCTTCTTCCATGTCCCTCCTCAACACACCCTTTCACCAAGACCCTCCGCAACAACAACAACAACCACAACCTTCCCCTAATAAGCCATACAAGAGGAGCATAGTCACCTCATTAATGGAAGCTGCAACCTTCACCACCACCACCACCTCTAATTCCTTCAAAGAAGACACCTACTTGGTGTCTCAACTCAAGTCCTCTGAGAAGAAAGCACTTCAAGAGCTCAAGGACAAGCTCCTTGCTTCTTCTTCTGATGATTCCAACAACAACCATGCTTCTTCCACCATGTGGGGTGTTTCTTTGCTTGATAATGATAGGGGTGATGTGTTGCTATTGAAGTTCCTAAGAGCTAGGGACTTCAGGGTTGTTGATGCTTTCAACATGCTTCTCAAGTGCCTTGCTTGGAGGAAGGAGTTTGGTGCTGACAATGTTGTGGATGAGGACTTGGGGTTCAAGGAGCTTGAAGGGGTTGTGGCTTATACTCATGGCTATGACAGAGAGGGGCACCCTGTGTGCTACAATGATTATGGGGTGTTCAAGGATAAGGACATGTATGAGAGGGTTTTTGGGGATGAGGAGAAGCTGAACAAGTTCTTGAGGTGGAGGGTTCAAGTGCTAGAGAGAGGGATAAGGCTTCTACATTTCAANCCTGGTGGGGTCAATTCTTTGATTCAGGTCACTGATCTTAAGGACATGCCTAAGAGAGAGCTCAGGGTTGTGTCAAATCAGATCCTCTCACTCTTCCAGGATAACTTTCCAGAAATGGTGGCTCGGAAGATTTTCATCAATGTGCCCTGGTATTTCAGCATGTTATATTCAATGTTCAGCCCGTTTCTGACCCAAAGAACTAAGAGCAAGTTTGTGATCTCTAAGGAAGGAAATGCTGCAGAGACACTGTACAAATTGATAAGGCCTGAAGATATTCCTGTTCGATATGGAGGACTGAGTCGGCCTAGTGATTTGCAGAATGGTCCCCCAAAACCAGCTTCTGAGTTCACAATTAAAGGAGGAGAGAAAGTGAACATACAAATAGAAGGGATTGAGAGTGGTGCAACAATCACATGGGACATTGTGGTGGGAGGCTGGGAGTTGGAATACAGTGCTGAGTTTGTCCCAAATGCAGAAGGTAGCTACACCATAGCAGTTGAGAAGGCAAGGAAGGTTGAGGCCTCAGAGGAAGCAATCCACAACTCATTCACTTCAAAAGAAGCTGGNAAAATGGTACTCTCAGTTGATAACTCTGCCTCAAGGAAGAAAAAAGTTGCTGCTTATCGCTATTTTGTCCGCAAATGCCGCAACACACCATGTGATCAAAAGCAATTAAGCCTCAAATAGTGTGGGGTATATTATAGCACCTCTATACTATAATGATGTTTTGCTTGTGATGTTACTCCTAACTTNTTAACCATCATGGTTTG

Protein Sequence

Location information (JBrowse)

Scaffold	Start	End	Strand
Scaffold00150	305420	308200	+

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID
--	--	--	--	--

Gene Ontology

biological_process
GO:0006810 transport

cellular_component
GO:0016021 integral component of membrane

Pfam domain

Protein	Pfam accession	Pfam name	Alignment start	Alignment end	E-value
Glyur000150s00014601.1	PF03765.10	CRAL_TRIO_N	89	152	4.10E-07
Glyur000150s00014601.1	PF00650.15	CRAL_TRIO	173	334	2.10E-31

Expression pattern

SRP053019

SRA Experiment	Description	TPM
SRR1783599	control	17.869
SRR1783600	control	17.874
SRR1783602	moderate drought stress	12.119
SRR1811619	moderate drought stress	12.190

DRP000996

SRA Experiment	Description	TPM
DRR006519	Root Summer glycyrrhizin high producing strain	7.502
DRR006520	Root Summer glycyrrhizin high producing strain	7.287
DRR006521	Root Winter glycyrrhizin high producing strain	0.140
DRR006522	Root Winter glycyrrhizin high producing strain	0.136
DRR006523	Root Summer glycyrrhizin low producing strain	3.955
DRR006524	Root Summer glycyrrhizin low producing strain	3.887
DRR006525	Leaf Summer glycyrrhizin high producing strain	12.904
DRR006526	Leaf Summer glycyrrhizin high producing strain	12.753

SRP065514

SRA Experiment	Description	TPM
SRR2867873	Salt Stress (root)	14.312
SRR2868004	Drought Stress (root)	9.252
SRR2967015	Control (root)	10.977

SRP215420

SRA Experiment	Description	TPM
SRR9715738	Leaf	15.902
SRR9715740	Leaf	19.607
SRR9715741	Leaf	17.884
SRR9715739	Root	3.840
SRR9715742	Root	5.241
SRR9715743	Root	4.091

SRP188776

SRA Experiment	Description	TPM
SRR8749027	MeJA induced 9h	14.606
SRR8749028	MeJA induced 9h	4.529
SRR8749029	MeJA induced 9h	3.437
SRR8749030	Uninduced	0.000
SRR8749031	Uninduced	0.000
SRR8749032	Uninduced	0.018

SRP175571

SRA Experiment	Description	TPM
SRR8400026	NaCl treatment - Root	17.860
SRR8400027	Control - Root	17.770