Gene detail information of Glyur000150s00014586 |
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| TAIR | AT1G79150.1 | 0 | binding |
| NR | XP_004492503.1 | 0 | PREDICTED: LOW QUALITY PROTEIN: nucleolar complex protein 3 homolog [Cicer arietinum] |
| trEMBL | tr|G7KTA4|G7KTA4_MEDTR | 0 | Nucleolar complex-associated protein {ECO:0000313|EMBL:AES79605.1} |
Sequence
| Transcript Sequence |
|---|
| Protein Sequence |
|---|
Location information (JBrowse)
| Scaffold | Start | End | Strand |
|---|---|---|---|
| Scaffold00150 | 230863 | 239213 | + |
Gene family
| Gene family | subfamily |
|---|---|
| -- | -- |
KEGG pathway
| KO | Enzyme | Enzyme ID | pathway | mapID |
|---|---|---|---|---|
| -- | -- | -- | -- | -- |
Gene Ontology
|
Pfam domain
| Protein | Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|---|
| Glyur000150s00014586.1 | PF07540.6 | NOC3p | 191 | 283 | 1.20E-28 |
| Glyur000150s00014586.1 | PF03914.12 | CBF | 561 | 714 | 1.80E-27 |
Expression pattern
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR1783599 | control | 13.457 |
| SRR1783600 | control | 13.525 |
| SRR1783602 | moderate drought stress | 13.088 |
| SRR1811619 | moderate drought stress | 13.066 |
| SRA Experiment | Description | TPM |
|---|---|---|
| DRR006519 | Root Summer glycyrrhizin high producing strain | 16.129 |
| DRR006520 | Root Summer glycyrrhizin high producing strain | 15.696 |
| DRR006521 | Root Winter glycyrrhizin high producing strain | 9.106 |
| DRR006522 | Root Winter glycyrrhizin high producing strain | 8.829 |
| DRR006523 | Root Summer glycyrrhizin low producing strain | 23.214 |
| DRR006524 | Root Summer glycyrrhizin low producing strain | 22.938 |
| DRR006525 | Leaf Summer glycyrrhizin high producing strain | 6.915 |
| DRR006526 | Leaf Summer glycyrrhizin high producing strain | 6.853 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR2867873 | Salt Stress (root) | 28.729 |
| SRR2868004 | Drought Stress (root) | 26.596 |
| SRR2967015 | Control (root) | 25.829 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR9715738 | Leaf | 8.258 |
| SRR9715740 | Leaf | 12.544 |
| SRR9715741 | Leaf | 8.871 |
| SRR9715739 | Root | 1.664 |
| SRR9715742 | Root | 18.668 |
| SRR9715743 | Root | 14.408 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8749027 | MeJA induced 9h | 28.874 |
| SRR8749028 | MeJA induced 9h | 21.180 |
| SRR8749029 | MeJA induced 9h | 19.036 |
| SRR8749030 | Uninduced | 4.336 |
| SRR8749031 | Uninduced | 3.141 |
| SRR8749032 | Uninduced | 5.390 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8400026 | NaCl treatment - Root | 23.252 |
| SRR8400027 | Control - Root | 20.976 |