Gene detail

Gene detail information of Glyur000150s00014583

Functional Annotation

Database	Orthologs	E value	Annotation
TAIR	AT2G38330.1	6.00E-120	MATE efflux family protein
NR	XP_004492499.1	0	PREDICTED: MATE efflux family protein 2, chloroplastic-like isoform X1 [Cicer arietinum]
COG	YP_003706607.1	8.00E-44	MATE efflux family protein [Truepera radiovictrix DSM 17093]
Swissprot	tr\|Q84K71\|MATE2_ARATH	0	MATE efflux family protein 2, chloroplastic (Precursor)
trEMBL	tr\|K7L1Y8\|K7L1Y8_SOYBN	0	MATE efflux family protein {ECO:0000256\|RuleBase:RU004914}

Sequence

Transcript Sequence

>Glyur000150s00014583.1
GTTATGCTTTGTTTGGCTTTGCCACTCTCACTCTCCAAATTTGAGAATGGCGTCTTCTTCTTTCTCTACCTGTTTTCTCTGCATACCCTCTTTGAATTCGAAATCCTCAACAGTACTGAAATCTCCAACGCTAACCACAAAAAAGCCTCATTGCTTAGCTCGTCTTCGAGTTCGAGTTTCACAGAAAGCTTCTCCTCCTCACAACAACAACAACAATGCCACCACCGATTCTGTTGAAACACCCTCCTCCCCTGAACCGCCTCATACCTCCTCCTTTTCTTTGCTTCATCATTTCAGAAATGGGTGGGCAGGGTGGCTTAAATTTGATGAACTTGGAATGGAGATGCTGTCCATTGCCCTGCCTGCTGCTGTGGCCTTGGCAGCTGACCCAATTGCCTCATTGATTGACACAGCATTTGTTGGGCACATAGGGGCAGTTGAATTAGCTGCAGTTGGAGTTTCGGCTTCTGTGTTTAATCTAGTGTCAAAAGTATTCAATGTTCCTTTACTCAATATTACTACATCCTTTGTTGCGGAGGAGCAGGCACTGANTAGCAAGGAAGAAGATTCCAGTCTAACTAAGGAAAATGGCAAGTACCAAAGCAAGAAGCTCCTTTCTTCAGTATCAACTTCNCTAGCACTTGCTGCAGCTCTTGGAATTGCTGAAACTGTGGCGCTTTCTCTTGGCTCTGGCATGCTTATGAATATCATGGGTATACCTGCTGATTCTCCAATGCGTGGACCTGCCCAGCAATTTCTTACATTAAGGGCCTTTGGTGCTCCACCAATTGTGATTGCATTAGCTGCACAAGGCACTTTTCGTGGATTTAAGGATACAAAGACGCCTCTTTATGCTGTGGGCAAGTATTGCAGCAGCTTCCTCCCTACCTCTCTCTCCATTTACTTACTCATATGTTACATACAATTGAACTTAGCATCTTCTTCCTGTGGGCTTTTTCTTGAAATGTCAGGTGCTGGAAACTTTCTTAATGTCATATTGGATCCAATATTGATATTTCTTTGTGGTCTTGGAGTTGGTGGTGCTGCAATTGCTACAGTGATCTCTGAATATTTAATAGCTTTCATTCTTCTATGGAAATTGAGTGGTGAAGTGCTGCTAATCCCTTTTGACTTTGATCAGTTTGATGGGAGAAAAGTATTCAGCTATCTGAAATCTGGTGGTCTTCTTATTGGCAGGACTTTGGCTGTGTTTATAACTATGACACTCACAACATCTGTGGCAGCTAAGCAGGGCCCTATAGCTATGGCAGGTCATCAAATTTGCATGCAAGTTTGGTTGTCTATATCTTTGCTCACTGATGCTCTGGCGCTTGCCGGTCAGACTCTTCTTGCTGGTAGTTACTCACTGGGAAATTATGAGCAAGCACGCCTCATTATATATAGAGTGATACAGATTGGTTTAGGAGCTGGAATCACTTTGTCTGTGATCTTATTTTTTGGCTTTGGAGCATTTTCTAGTTTATTTAGCACAGATTCAGAAGTTCTGGATGTTGCTCGGTCAGGTATATTGTTTGTTGCTGGATCTCAACCAGTGAATGCCTTGGCATTTGTTATTGATGGGATTTATTATGGGGTATCAGACTTTGAATATGCTGCTTACTCGATGGTGCTAGTTGGACTAGTTTCTTCAACTTTCCTGCTGGTGGCTGCTCCAGTACTTGGACTTCCTGGAGTCTGGATAGGATTGCTAAGCAGCAAAAGTGGCCCATGGGATATGATCTGGTATAAAGATGGAGCAGAAGACTGATTCACATGCATTTAAAGTCATCTATTTAGTATTCAGAAGTTCCAACTTTTACTTATCAGGTTAAAAAGGCATTTTCAGAATGGTTAGGACATGATTCTCAAGAGCTNTAATATGCTGACACTAATAGGCTCTGGAACCTCTTCTGGTTACCAAATCTCAGCACTTGGAAGAGAATCCAGGAGCATTATACAGGACTATAATAAATCATTAGAATGTTGTTGCAGCAATTGNTGAAAACCAATTGCCAAAATCTTTCTGGTACAATTGGAGAGAGTTTGAATGGCTAAAAGAAGCAAAGGGAGGAAGGAAAATTATTGAATGACCAGCCTGCAGAATAGAAGTCAAGTCTTTTGGCCTTCTGNCATTTTTTTGGAAATTTGTATTTATTAGGAGATTGTACATGCCTTTGCATATTTTCATTGCTGAAGGCAGCTACATCTTAGGTGGGTGGTATATGTGATCTGTTCTTTGTGCTGTATAGGCTGAGGTTGTAGTATATACATTTAAAGTCTCTTTCTAGGAAAAATCATTATTGTAGCTGTAATCTTCAGCAGTCAATTGGGTACAGACTACAGG

Protein Sequence

Location information (JBrowse)

Scaffold	Start	End	Strand
Scaffold00150	209984	217584	+

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID
--	--	--	--	--

Gene Ontology

biological_process

GO:0006855 drug transmembrane transport

GO:0055085 transmembrane transport

cellular_component
GO:0016020 membrane

molecular_function

GO:0015238 drug transmembrane transporter activity

GO:0015297 antiporter activity

Pfam domain

Protein	Pfam accession	Pfam name	Alignment start	Alignment end	E-value
Glyur000150s00014583.1	PF01554.13	MatE	179	270	2.50E-06
Glyur000150s00014583.1	PF01554.13	MatE	382	529	5.20E-15

Expression pattern

SRP053019

SRA Experiment	Description	TPM
SRR1783599	control	0.389
SRR1783600	control	0.412
SRR1783602	moderate drought stress	0.785
SRR1811619	moderate drought stress	0.825

DRP000996

SRA Experiment	Description	TPM
DRR006519	Root Summer glycyrrhizin high producing strain	0.457
DRR006520	Root Summer glycyrrhizin high producing strain	0.429
DRR006521	Root Winter glycyrrhizin high producing strain	0.120
DRR006522	Root Winter glycyrrhizin high producing strain	0.139
DRR006523	Root Summer glycyrrhizin low producing strain	1.336
DRR006524	Root Summer glycyrrhizin low producing strain	1.407
DRR006525	Leaf Summer glycyrrhizin high producing strain	26.745
DRR006526	Leaf Summer glycyrrhizin high producing strain	26.550

SRP065514

SRA Experiment	Description	TPM
SRR2867873	Salt Stress (root)	3.380
SRR2868004	Drought Stress (root)	2.016
SRR2967015	Control (root)	3.048

SRP215420

SRA Experiment	Description	TPM
SRR9715738	Leaf	31.108
SRR9715740	Leaf	45.854
SRR9715741	Leaf	28.153
SRR9715739	Root	0.377
SRR9715742	Root	0.324
SRR9715743	Root	0.541

SRP188776

SRA Experiment	Description	TPM
SRR8749027	MeJA induced 9h	0.784
SRR8749028	MeJA induced 9h	0.346
SRR8749029	MeJA induced 9h	0.260
SRR8749030	Uninduced	0.372
SRR8749031	Uninduced	0.067
SRR8749032	Uninduced	0.140

SRP175571

SRA Experiment	Description	TPM
SRR8400026	NaCl treatment - Root	2.266
SRR8400027	Control - Root	2.019