Gene detail

Gene detail information of Glyur000150s00014582.1

Functional Annotation

Database	Orthologs	E value	Annotation
TAIR	AT1G67510.1	0	Leucine-rich repeat protein kinase family protein
NR	XP_004492498.1	0	PREDICTED: probable inactive leucine-rich repeat receptor-like protein kinase At1g66830-like [Cicer arietinum]
COG	YP_001192956.1	8.00E-31	two component regulator [Flavobacterium johnsoniae UW101]
Swissprot	tr\|Q9C9N5\|Y1668_ARATH	3.00E-153	Probable inactive leucine-rich repeat receptor-like protein kinase At1g66830 (Precursor)
trEMBL	tr\|G7KTA0\|G7KTA0_MEDTR	0	Receptor-like kinase {ECO:0000313\|EMBL:AES79601.1}

Sequence

Transcript Sequence

>Glyur000150s00014582.1
ATGCCCGTTACGCTCTTTTTCTTCCTCCTCCTTTTCTTCTTCTTCCACCCCGCCGTTTCTCTCTCCTCCGACGGCCTCGCCCTTCTCACTCTAAAATCCGCCGTCGACGGCGCCGACGCCGGTGCGTTCTCCGACTGGAGCGAGGACGACCCCACGCCGTGCACGTGGTCCGGCATAAGCTGCGCAAACGTCTCCGGCGACGCTGAGCCACGCGTCGTCGGCGTAGGGATCGCCGGCAAGGGACTCCGAGGCTACCTCCCGTCGGAGCTCGGAAACCTCCTCTACCTCCGGCGCCTGAGTCTCCACGACAACGACTTCCACGGCTCAATCCCCTTACAGCTCTTCAATGCCACCTCACTCCACAGCATCTTCCTCCACGGCAACAACCTCTCCGGCGAACTCTCCCCCTCCGTTTGCAACCTCCCACGCCTCCAGAACCTCGACCTCTCCGATAACTCCCTCTCCGGCACCATCCCAAACTCCCTCGGGAACTGCTCGCAGCTCCAGCGCCTCGTCCTCGCGCGCAACAAATTCTCCGGCGAGATTCCGGCGACTCCATGGCCGAACCTGAAAAGCCTCGTCCAGCTCGACCTCTCCGGGAACAATCTAGGAGGTTCGATCCCCGACCAAATCGGCGACCTCGGTTCCCTCGCCGGAANCCTAAACCTCTCGTTCAACCACCTATCGGGGAAACTCCCCAAATCCCTAGGGAAGTTACCGGTAACGGTGAGCTTCGATCTTAAGAACAACGATCTCAGCGGTGAGATTCCTCAAACGGGGTCGTTTTCAAACCAGGGACCCACCGCGTTTCTTAACAACCCGAAACTCTGCGGGTTCCCACTGCAAAAATCGTGTGACGGTTCGGCGCCGAGTGAACCGGGGAAGAGCCCCGGTTCGGGTCGTGGACCGGTGAACCGGTCTTCAAAGGGGTTGAGCCCCGGGTTGATTATTTTAATCTCGGTGGCTGATGCTGCTGGGGTTGCTTTGATTGGGCTTGTGGTTGTGTATGTGTATTGGAAGAAGAAGGACAAATCCTCCAATGGGTGTAGTTGCACTGGGAAGAGCAAGTTTGGTGGTGGTGGTGAAAATGAGAAATCAAGGTTGTGTTGTGTGTGTTGGTCTTTGGGGTTGAAGGGTGGTGGTGGTGATGATTCAGAGGTGGAGGAGGGTGAGAAAGGTGGGGGGGAGGGTGGGAGAGGGGAAGGGGAATTGGTGGCTATTGATAAAGGTTTCAGCTTTGAGCTTGATGAGTTGTTGAGGGCTTCAGCATATGTGTTGGGGAAGAGTGGGTTGGGGATAGTGTATAAGGTGGTGCTTGGGAATGGGGTGCCAGTGGCTGTGAGGAGATTAGGGGAAGGTGGGGAACAGAGGTACAAGGAGTTTGCTGCTGAGGTTCAGGCCATTGGGAAGGTTAAGCACCCTAACATTGTGAAGCTGAGAGCTTATTATTGGGCTCCTGATGAGAAGCTCTTGATNAGTGATTTCATCTCCAATGGCAACTTGGCCACTGCCCTTAGAGCTAAACCTCTTTTGGCTTTTTTGCTGAGAATAGCCAAAGGAACAGCCAGGGGTTTGGCTTATCTCCATGAATGCAGTCCAAGGAAATTTGTTCATGGTGACATCAAACCCTCCAACATCCTCCTTGACACAGACTTCCAACCCCACATTTCTGATTTTGGTCTCAACAGGCTAATCAGCATCACAGGCAACAACCCTTCCTCTGGTGGCTTCATGGGTGGAGCTCTTCCATACTTGAAGCCATCACAGACAGAGAGAATCAACAACTACAAAGCCCCCGAAGCGCGAGTACCAGGCTGCAGACCCACCCAGAAATGGGATGTGTACTCATTTGGAGTTGTGCTGCTTGAATTGCTTACTGGGAAGTCCCCAGATTCTTCTCCAGCAGCATCAACTTCAGTGGAAGTCCCTGACTTGGTAAGGTGGGTAAGGAAAGGGTTTGAACAAGAAAGCCCTTTATCTGAAATGGTTGATCCATCACTTCTCCAAGAAGTTCATGCCAAGAAAGAGGTACTAGCTGTGTTCCATGTAGCACTATCATGCTCAGAGGGAGACCCTGAGGTCAGNCCTAGAATGAAAACTGTCTCTGAAAACCTTGAAAGAATTGGATCATAA

Protein Sequence

Location information (JBrowse)

Scaffold	Start	End	Strand
Scaffold00150	201388	205425	+

Gene family

Gene family	subfamily
Transcription Factors Family	S1Fa-like
Protein Kinases Family	PPC:1.9.3

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID
--	--	--	--	--

Gene Ontology

biological_process

GO:0006355 regulation of transcription, DNA-templated

GO:0006468 protein phosphorylation

cellular_component
GO:0005634 nucleus

molecular_function

GO:0003677 DNA binding

GO:0004672 protein kinase activity

GO:0005515 protein binding

GO:0005524 ATP binding

GO:0016772 transferase activity, transferring phosphorus-containing groups

Pfam domain

Protein	Pfam accession	Pfam name	Alignment start	Alignment end	E-value
Glyur000150s00014582.1	PF08263.7	LRRNT_2	22	61	1.30E-09
Glyur000150s00014582.1	PF13855.1	LRR_8	142	203	3.30E-09
Glyur000150s00014582.1	PF04689.8	S1FA	306	341	0.00016
Glyur000150s00014582.1	PF00069.20	Pkinase	426	634	2.10E-29

Expression pattern

SRP053019

SRA Experiment	Description	TPM
SRR1783599	control	11.397
SRR1783600	control	11.138
SRR1783602	moderate drought stress	7.415
SRR1811619	moderate drought stress	6.922

DRP000996

SRA Experiment	Description	TPM
DRR006519	Root Summer glycyrrhizin high producing strain	8.392
DRR006520	Root Summer glycyrrhizin high producing strain	8.055
DRR006521	Root Winter glycyrrhizin high producing strain	0.913
DRR006522	Root Winter glycyrrhizin high producing strain	0.819
DRR006523	Root Summer glycyrrhizin low producing strain	6.250
DRR006524	Root Summer glycyrrhizin low producing strain	6.507
DRR006525	Leaf Summer glycyrrhizin high producing strain	9.446
DRR006526	Leaf Summer glycyrrhizin high producing strain	8.763

SRP065514

SRA Experiment	Description	TPM
SRR2867873	Salt Stress (root)	20.191
SRR2868004	Drought Stress (root)	14.981
SRR2967015	Control (root)	16.703

SRP215420

SRA Experiment	Description	TPM
SRR9715738	Leaf	3.805
SRR9715740	Leaf	5.616
SRR9715741	Leaf	3.487
SRR9715739	Root	14.182
SRR9715742	Root	11.119
SRR9715743	Root	9.953

SRP188776

SRA Experiment	Description	TPM
SRR8749027	MeJA induced 9h	4.061
SRR8749028	MeJA induced 9h	2.535
SRR8749029	MeJA induced 9h	2.052
SRR8749030	Uninduced	1.333
SRR8749031	Uninduced	0.488
SRR8749032	Uninduced	1.010

SRP175571

SRA Experiment	Description	TPM
SRR8400026	NaCl treatment - Root	13.913
SRR8400027	Control - Root	17.392