Gene detail

Gene detail information of Glyur000150s00014579

Functional Annotation

Database	Orthologs	E value	Annotation
TAIR	AT1G57790.1	6.00E-05	F-box family protein
NR	XP_004496805.1	2.64E-144	PREDICTED: uncharacterized protein LOC101488742 isoform X1 [Cicer arietinum]
trEMBL	tr\|G7J093\|G7J093_MEDTR	2.00E-137	Uncharacterized protein {ECO:0000313\|EMBL:AES68336.2}

Sequence

Transcript Sequence

>Glyur000150s00014579.1
AAGCCACCCAGATGATTGAGACGAGTCTGACCAGCTTCTGCATTCTGCAGAAGGAGCACTAACCAAAAACTATCACCGATCTTCCATTGGTTTGCGTTTCCACCAACATGCCCGAAAATTCTCCTGGTTCTCGATTCAACTCCGAAATGGGGCTTTCATTCGCCTTTAAGTGCACAAACAACGCTGAACTTCTTCTCTACAATTCGAGAAAGTGCAATCTAAGTTGGTTAGGTGAGGTTCCTGAATGCCTCTTGCTGACAAAAGCACATCCCTTTCATTGAGCTGCACACCTCTAGCATGTTAGGAANGGCTTTCTGGCTTAGAGGCACAAAGAGAGGCAGGGATACAAGGNGAGTGAAAAGAAATTAGGGAATGAAGCAAGGGAATGATGAAGACGATTCCAACCGAAATAAGAGTTCTAAGGGCCTGCGTCTATCGTCGTTATCAAGGAAAAGAACNAAAAAGGTAGAGGAAAATGAGGAAGTGAAAGGCGAGGGTCATCTTCCTTGGGACTTGCTTGATATCATTTCCAAGCAACTAGATTTTGATGACCTTTTTCAATTTGCTGGTGTGTGCAAGAGCTGGAGGGAATTTCACAAAATTTACTGGAAAACATTCACAGCATCCAAATCACCATTACTTGTTCAGACCTCTTCATGGGCAAAGAAAGCTTATGTTTTCTTTAGCATTCCTGACCGAAAAGTTTATAGCTCGAAGATGGATTACTTCTGGGGTTTATCCTATTCTGGGTCTTCTAGTGGATATCTGATCATGGCAGGTGCTGGTAATCTTCTTCTAATGAACCCTTTTACAAGAAGAAAGAAGGAAATCAATACCACATCGCTTCACCTTCAAGGGAATTTCGAGTATAGGGCTTGCCAGCCNTTACTTGCTTTTGCCAAAGGATCCGAGGAATTCGTCCTAGTGGTTTCATGCAAACATACTGACAGTTTGCATGTCTATCAATCTCGAAATTCCAGTTGGGTCACTTATTCGTCGAAGGGATATCCATGGAAGGTTGTTGACTTTGTGGTCTTGCATAAGTATATATATGTCATTACTAACAAGGCCAACATAGGGGTACTTAGCCTCAAATCTGCTTCCATAAAATTTCTGAAGCTAAAGAATACCCCCAGTGTTATGTCCACAGGACTTAAGTTGGTTAGTTGTGATGGGCAGCTTCTAGTGGTTCATTTTGAGCCTACNAAGACTTTGGATGTGTACAAGATAGACTTGTCAACCATGAGCTATCTGAAGCAGGAGAATTTGGGTGACCTTGCATTGTTTTATGGTATGAGAAGAAAATGCTATGCATTGAGCAACCCGAAAAGGTGGGGATATGACAAGAACTCTGTGTATTACATCGATTGTATATCTGCAGAATGCACTGTGTATTCAGGGGATGATGGCAAACTGGTGAAGAGCATTCGTCCCAGTCGTCGTGCTAGGCTTCAAGCCCATCCCAGGTCAAGAATCAGATGGTTGGATTGGTGTTTTAGACATCTGCATGATGAGGTAGATTATTCTCTGGTCTGAGTAACCTGCTCNCTGCACACCTTGCAGCTTTGTGTCCTTTGTGTTTGGACCTTGTTCCTTTGTGTTTTCTCTTTTATTTGCTTATAATACTTTGACTAGACTGGAAAAACTTGGTCATGGTTTCTAGTTTCAGTAACTTTGCTCTCTGGTCGT

Protein Sequence

Location information (JBrowse)

Scaffold	Start	End	Strand
Scaffold00150	185970	191519	-

Gene family

Gene family	subfamily
Ubiquitin Family	F-box

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID
--	--	--	--	--

Gene Ontology

molecular_function
GO:0005515 protein binding

Pfam domain

Protein	Pfam accession	Pfam name	Alignment start	Alignment end	E-value
Glyur000150s00014579.1	PF00646.28	F-box	44	73	2.50E-05
Glyur000150s00014579.2	PF00646.28	F-box	44	73	2.50E-05

Expression pattern

SRP053019

SRA Experiment	Description	TPM
SRR1783599	control	15.119
SRR1783600	control	14.554
SRR1783602	moderate drought stress	19.031
SRR1811619	moderate drought stress	19.531

DRP000996

SRA Experiment	Description	TPM
DRR006519	Root Summer glycyrrhizin high producing strain	12.531
DRR006520	Root Summer glycyrrhizin high producing strain	11.978
DRR006521	Root Winter glycyrrhizin high producing strain	10.878
DRR006522	Root Winter glycyrrhizin high producing strain	10.507
DRR006523	Root Summer glycyrrhizin low producing strain	16.262
DRR006524	Root Summer glycyrrhizin low producing strain	16.235
DRR006525	Leaf Summer glycyrrhizin high producing strain	5.098
DRR006526	Leaf Summer glycyrrhizin high producing strain	5.094

SRP065514

SRA Experiment	Description	TPM
SRR2867873	Salt Stress (root)	22.277
SRR2868004	Drought Stress (root)	22.442
SRR2967015	Control (root)	23.304

SRP215420

SRA Experiment	Description	TPM
SRR9715738	Leaf	7.486
SRR9715740	Leaf	8.717
SRR9715741	Leaf	10.939
SRR9715739	Root	4.634
SRR9715742	Root	9.291
SRR9715743	Root	10.605

SRP188776

SRA Experiment	Description	TPM
SRR8749027	MeJA induced 9h	9.950
SRR8749028	MeJA induced 9h	9.265
SRR8749029	MeJA induced 9h	5.323
SRR8749030	Uninduced	9.001
SRR8749031	Uninduced	5.244
SRR8749032	Uninduced	6.225

SRP175571

SRA Experiment	Description	TPM
SRR8400026	NaCl treatment - Root	30.985
SRR8400027	Control - Root	27.924