Gene detail

Gene detail information of Glyur000150s00014570.1

Functional Annotation

Database	Orthologs	E value	Annotation
TAIR	AT5G01600.1	4.00E-76	ferretin 1
NR	XP_003623359.1	1.02E-146	Ferritin-1 [Medicago truncatula]
COG	YP_002465080.1	8.00E-18	ferroxidase [Chloroflexus aggregans DSM 9485]
Swissprot	tr\|P19976\|FRI1_SOYBN	4.00E-147	Ferritin-1, chloroplastic (Precursor)
trEMBL	tr\|G7KT76\|G7KT76_MEDTR	4.00E-147	Ferritin {ECO:0000256\|RuleBase:RU361145}

Sequence

Transcript Sequence

>Glyur000150s00014570.1
CGCCCCTTTCATCACACGATCCTGTCCTTCCACGTGTTTTCCATCCAACGGTTCACAGAGACTGCCATTACATTTCAAATGGCCAAAACACCCCTTGCCACCACTATTTTACTCACCCAGCTTCCAGCTTCCAGCTTCCAGCTTCATCCACAACCCTTCAGAGCCACCATTAATTATTTTTCTTCCATTTCTCTGCTTACCCATTTGGAGATCCTACTGTTATGGCTCTTGCTTCTTCCAAAGTTTCATCCTTTTCTGGGTTTTCTCCCTCAACCNTTGTTGGGGACCGTCTCAGAAAGCCAAATTCTTCTTCTGTGGGACTTAATAAGAAGACGTGGGGAAGCAGAAACCTCACGGTTTGTGCATCACCTGCTTCTCTCACTGGGGTNATATTCGAACCATTTGAGGAGGTGAAGAAGGATGCTCTTGCTGTTCCAGTGGTACCTCAAGTTTCATTGGCTCGTCACAACTATGCTGATGAATGTGAATCTGCAATTAACGAGCAGATAAATGTGGAATACAACGTTTCCTATGTGTACCACTCCTTGTTTGCATACTTTGACAGAGACAACGTGGCTCTCAGGGGACTTGCCAAGTTCTTCAAGGAATCTAGTGAAGAAGAAAGAGAACACGCTGAAAAGCTTATGAAATATCAGAACATTCGTGGTGGAAGAGTTGTACTTCACCCCATCAAGAATGTGCCCTCAGAATTTGAGGATGTGGAAAAAGGGGATGCATTGCATGCAATGGAATTAGCTTTATCTTTGGAGAAGTTAACAAACGAGAAACTTCTGAATGTGCACAGTGTGGCAGACCGCAACAATGACCCTGAAATGGCACACTTCATTGAAAGCGAATTTTTGAGTGAACAGGNTGAAGCAATTAAGAAGATAGCAGATTATGTATCTCAACTGAGAAGGGTTGGAAAGGGTCATGGTGTTTGGCACTTTGATCAAAGACTTCTCCATGAGGAAGATGCTGCTTGATCATGAAAATCCATCTTTTTTAATCTTTTAGTTTGCATTTGGTCTTTTCTGAAGTTCTGGGTTGTTTTCTGTTGTGGCATAGTATTCAAGTGTTTTTTTTTCCTATGTACTGAGATTACTGAACTTTAGAGTAATGTAATTGGCAGTGTCACATGCAAAAGGCTACAAGCCTTGTGCAAATAACATCTGTTAACCGCTTTGAGTAATCTTTGTCTGCAACAAATGAAGAGGTTTATAATGTTTTACAGTACACAAATTTGTATCCTGTGTCCAAAAGAAATGACACACGTAAAGGTGAATTGGCAAATTGTCAATTTGCATATTGANNA

Protein Sequence

Location information (JBrowse)

Scaffold	Start	End	Strand
Scaffold00150	134291	137691	-

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID
K00522	FTH1	EC:1.16.3.2	Mineral absorption	map04978

Gene Ontology

biological_process

GO:0006826 iron ion transport

GO:0006879 cellular iron ion homeostasis

molecular_function
GO:0008199 ferric iron binding

Pfam domain

Protein	Pfam accession	Pfam name	Alignment start	Alignment end	E-value
Glyur000150s00014570.1	PF00210.19	Ferritin	90	234	4.80E-40

Expression pattern

SRP053019

SRA Experiment	Description	TPM
SRR1783599	control	52.790
SRR1783600	control	53.050
SRR1783602	moderate drought stress	56.883
SRR1811619	moderate drought stress	56.752

DRP000996

SRA Experiment	Description	TPM
DRR006519	Root Summer glycyrrhizin high producing strain	39.132
DRR006520	Root Summer glycyrrhizin high producing strain	38.612
DRR006521	Root Winter glycyrrhizin high producing strain	540.920
DRR006522	Root Winter glycyrrhizin high producing strain	526.677
DRR006523	Root Summer glycyrrhizin low producing strain	17.021
DRR006524	Root Summer glycyrrhizin low producing strain	17.375
DRR006525	Leaf Summer glycyrrhizin high producing strain	8.494
DRR006526	Leaf Summer glycyrrhizin high producing strain	8.368

SRP065514

SRA Experiment	Description	TPM
SRR2867873	Salt Stress (root)	45.234
SRR2868004	Drought Stress (root)	34.905
SRR2967015	Control (root)	51.405

SRP215420

SRA Experiment	Description	TPM
SRR9715738	Leaf	13.672
SRR9715740	Leaf	11.658
SRR9715741	Leaf	6.534
SRR9715739	Root	26.293
SRR9715742	Root	37.093
SRR9715743	Root	35.448

SRP188776

SRA Experiment	Description	TPM
SRR8749027	MeJA induced 9h	7.184
SRR8749028	MeJA induced 9h	4.194
SRR8749029	MeJA induced 9h	11.557
SRR8749030	Uninduced	2.166
SRR8749031	Uninduced	4.088
SRR8749032	Uninduced	5.519

SRP175571

SRA Experiment	Description	TPM
SRR8400026	NaCl treatment - Root	161.043
SRR8400027	Control - Root	212.363