Gene detail

Gene detail information of Glyur000150s00014558.1

Functional Annotation

Database	Orthologs	E value	Annotation
TAIR	AT2G01570.1	8.00E-10	GRAS family transcription factor family protein
NR	KHN40716.1	0	Nodulation-signaling pathway 2 protein [Glycine soja]
Swissprot	tr\|Q5NE24\|NSP2_MEDTR	2.00E-17	Nodulation-signaling pathway 2 protein
trEMBL	tr\|I1N309\|I1N309_SOYBN	0	Uncharacterized protein {ECO:0000313\|EnsemblPlants:GLYMA18G43580.1}

Sequence

Transcript Sequence

>Glyur000150s00014558.1
ATGATGCAGCAGCCAGAGATTCTTGATCAGTCCCCATGGTCATTCTATGAAGACATGATGATGGACTCATCAAATTTTGATCTAGTTTCTTCTGATGAACCCCACTATGGCTTCTTCACCATGGTTGATGACTGTGGCATCATCATCATGGATGATGACCATGACCATGTTGGTGATTGTACTGAATTCAGTACTCTCTTGAGCAATTCAGAGAACAACACTGCTTCTGAATCTGAAGTCTTCTCCTTTCCTAATTCCAATTCCTCCATGTTGTTCACCAATGATCATCATATCCAATTCCNAATTGATGAGGAAACCCTTCAACTCCCATCACTGATGGAATTGGATATTGCTTTTGATGATTCACTNTTGAGTCCCCCCCAGAATACTATTGATCATCATCATGGCCATGATGAAGAAAGTGAAGGGAGCTTCAGTATCTTCCCTTCACAGAATTTCCTTCCCAGTGATGAAGATGCAGCATGGAGTCCTACCCTATCAGAGAAATCAGAGTTTTCCTCAACTACTCAACCAATATCATCGCTGATTTTGCCACAAGAGGGCATGGAAATTGAAAACAAGGTGAGCCTTCCACACCTGATNGAGGCCTTTATAGAAGCCTTGGAGCAAGGACAGAAAGCACTATCACAAGTGATCTTGAGGTGCATAAGCCAAAAGGCTACTACCCCACTTGCAAGTGAATCTCTTGAGAGACTTGCATTTTACCTGTCACAAGAAGTAGTGACAAATCACCACCATGGAGATTATCTTAAAGGGGAGGCCTCTAAGAACTNTGGGGCTTCCTTGAGGGCATTCTATCAAGGGCACCCAATTGGGAAAGTTGCTCACTTTGCAGCTGTCTCAGCAATTCTTGAGGCCATATCAGAAGAAAATTGTGATGCCATACACTTGGTGGACTTTTGTATGGGACATGGGCTTCAATGGCCTTTTTTATTTGAGGCCATTGCTCACACGAACAAAACATTGAAATTGACATCAATCAAATGGGGTGGTGATGGAATTGAAAGCCCTGAATGTGTTTCCACTACTACTCCATCATGGAGTTTTGAGGAAACCAAAAGGCAACTCCTTGAGCATGCCAAATCATGTGGTTTGAAACTGAAGGTAGAGGAAAAGGGATTGGAGGANCTGGTTGCTGAGATCAAAAGGGGTGGGAAAATGAGAGAGTTTTTGGGCTTCAATTGCATGGTTGGTCTTCCTCATATGGGGATGGTAAGGAGCAGAAGAAGACATGCCTTGGAGTTTCTCAAGGTAGCTGAGGATTTGATAAAAATCTCTGGCAACAAGGGAATCATAACATTTGGGGATGGTGATGCATTTGAGAAATTGAAAAACAGCTTGAGTTTGAGGTCATTTTTTGAAGGGCAATTGGTGCATTACCAGGCCTTGTTGGAATCAATTGAGTCACACTTCCCAGCTCGTTTCTCAGAAGCAAGGACTGCATGTGAAGTGCTGTTTGTGGCACCTTGTGTCTCTTCCCTTGCTTGGTTACAAACATGGGAGGAGATGAAAAGGGATTGCCATCATATTCAGGCAGAGATTTGCATAGAGGGAGGTTGCAGCAGGTTGAGCAAGAACATTTTGATGGAAGTCAGAGAAGGGTTGAGAGGGAGTGAAGGTGGTTCATCATATCAGGCCAGGATTGAAGGACAAAATGACAATGAACTTGTTTTGGCATGGAAAGGAACACAACTATTGAGATTTTCAAGNTGGAAAAACTAG

Protein Sequence

Location information (JBrowse)

Scaffold	Start	End	Strand
Scaffold00150	69226	70968	+

Gene family

Gene family	subfamily
Transcription Factors Family	GRAS

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID
--	--	--	--	--

Gene Ontology

Not hits found.

Not hits found.

Pfam domain

Protein	Pfam accession	Pfam name	Alignment start	Alignment end	E-value
Glyur000150s00014558.1	PF03514.9	GRAS	204	579	2.30E-29

Expression pattern

SRP053019

SRA Experiment	Description	TPM
SRR1783599	control	0.314
SRR1783600	control	0.344
SRR1783602	moderate drought stress	0.246
SRR1811619	moderate drought stress	0.258

DRP000996

SRA Experiment	Description	TPM
DRR006519	Root Summer glycyrrhizin high producing strain	4.322
DRR006520	Root Summer glycyrrhizin high producing strain	4.496
DRR006521	Root Winter glycyrrhizin high producing strain	0.866
DRR006522	Root Winter glycyrrhizin high producing strain	1.024
DRR006523	Root Summer glycyrrhizin low producing strain	4.655
DRR006524	Root Summer glycyrrhizin low producing strain	4.786
DRR006525	Leaf Summer glycyrrhizin high producing strain	0.373
DRR006526	Leaf Summer glycyrrhizin high producing strain	0.319

SRP065514

SRA Experiment	Description	TPM
SRR2867873	Salt Stress (root)	1.900
SRR2868004	Drought Stress (root)	6.012
SRR2967015	Control (root)	10.680

SRP215420

SRA Experiment	Description	TPM
SRR9715738	Leaf	0.873
SRR9715740	Leaf	0.738
SRR9715741	Leaf	1.538
SRR9715739	Root	1.406
SRR9715742	Root	2.727
SRR9715743	Root	2.532

SRP188776

SRA Experiment	Description	TPM
SRR8749027	MeJA induced 9h	3.390
SRR8749028	MeJA induced 9h	14.535
SRR8749029	MeJA induced 9h	3.000
SRR8749030	Uninduced	2.327
SRR8749031	Uninduced	1.988
SRR8749032	Uninduced	0.891

SRP175571

SRA Experiment	Description	TPM
SRR8400026	NaCl treatment - Root	1.153
SRR8400027	Control - Root	1.628