Gene detail

Gene detail information of Glyur000150s00014554

Functional Annotation

Database	Orthologs	E value	Annotation
TAIR	AT3G51770.2	0	tetratricopeptide repeat (TPR)-containing protein
NR	XP_004492482.1	0	PREDICTED: ethylene-overproduction protein 1-like [Cicer arietinum]
COG	YP_005011082.1	6.00E-07	hypothetical protein [Niastella koreensis GR20-10]
Swissprot	tr\|O65020\|ETO1_ARATH	0	Ethylene-overproduction protein 1
trEMBL	tr\|V7B327\|V7B327_PHAVU	0	Uncharacterized protein {ECO:0000313\|EMBL:ESW12219.1}

Sequence

Transcript Sequence

>Glyur000150s00014554.1
ATCCTATCCACCTCTCAGTTTCAGTTCCCACAAAATCTAAAAGCTTCAACCATTCTCAAAGCTGCACCGTTAATTTTCCAACTTTGGTGGAACCCTCCAAAACAACCAAAAAAACCAAAACAAAGACCAGAAAAAAAAACGGGAGATGCAGCAGCAGCAACACAAAATCATACCAACCTCGATTCGTAATACGAAGATCAGAGATGGTTGTAAGGGAACTCAAATCTACGCTCTTAATAACCCTTCCGCTGGCGCCGGTGCTCCGATCAACGGCGGCGCCGGGGAGAAATTGTTCCAACCCGGTCGAGCCAAACCGGTCGGTAAGAAAACGACGGCGTCGACCACGTGCGACGTCGTTTTGGAGGGCCTCCTCCCTTGTGGCCTCCCCGCTTCGGAGCTTCTAGAACCCGTCGTCGAGCCTTGCCTGAAGCCCATCGATTTGGTCAGAACCCTCGCCGGCGTTCACCGCCGGATCGAGAATTGCGACAGTCCTGAGAGGTTTGAGGCGTTTTTGGAGCAATGCACGGTGTTCCGTGGCTTGCCGGATCCCAAGCTTTTCCGGCGGAGCCTCCGGTCGGCACGGCAACACGCCGCCGACGTGCACTCCAAGGTCATGGTGGCTTCGTGGTTGAGGTATGAGAGGAGAGAAGATGAGTTCGTGGGATCATTGGCAATGGATTGTTGTGGAAGAAACCTTGAGTGCCCCAAGGCTAGTTTGGTCCCTGGGTATGACCCTAAATCTGCGTTTGATCGTTGTTTGTGTTTTAATAGAAAGGTTATTGATGATGATGAAAATGATGGTAATGATAATGATAATGATAATGATGATGATGGTGACGGGGAATGCGAATGCTCATCTTCTTATGAAGATGATGATGGTGGTGGTTTTTACAATGACATGTCATTTTGTATTGGTGATAGTGAAATCAGGTGTAGTAGATACTCTATGGCCTCGCTTTCGAGGCCCTTTGAAGCAATGTTGTATGGTGGATTTGTTGAGTCTAGGAGGGAAAAGATAAATTTCTCCCTCAATGGGGTTTCTGATGAGGTGATGGCTGCGGTTGAGGTTTTTAGTAGGACCAAGAGGTTGAGTCNTTTTTCCCCCAATGTTGTCCTGGAGATGCTCTCTTTCGCGAATAGGTTCTGTTGTGGGGAGATGAAGTCTGCCTGCGATGCTCATTTGGCTTCTTTGGTTTCAGACATGGATGACGCGGTGTTGCTGGTTGAATACGGGTTGGAGGAGACCGCGTATCTGTTGGTTGCGGCTTGCTTGCAGGTGTTCCTGAGGGAGCTCCCTGGTTCAATGCAGTGTTTGAGTGTTATGAGATTATTTTGTAGTATAGAGGGTAGGGATAGGTTGGCCTTGGCAGGGCATGTCTCCTTTGGGTTGTATTATTTGTTGAGTNTGGTTGCGATGGAGGAAGATATGAGGTCTAACACGACAGTGATGCTTTTAGAAAGGTTAGGAGAGTGTGCGGTGAGCGGTTGGCAGAAGCAACTTGCTTATCACCAATTAGGTGTTGTTATGCTTGAGAGAAAAGAATACAAAGATGCACAACATTGGTTTGAGGCTTCTGTTGAGGCAGGGCATATTTATTCTTCAGTGGGTGTGGCAAGGGCCAAATATAAGCGTGGTCACACATATTCAGCATACAAGATGATAAACTCCCTTATTTCTGATCATCATAAACCCATTGGTTGGATGTATCANGAAAGGTCCTTGTATTGCACTGGAAAGGAGAAAATGATGGACTTGGTCTCTGCAACTGAATTAGATCCAACTCTTTCTTTTCCATACAAATACCGGGCTGTTTCTTTGGTGGAGGAGAACAATATTGGAGCTGCCATTTCTGAAATTAACAAAATAATTGGTTTCAAGATTTCTACTGACTGCCTTGAATTGAGAGCTTGGTTCTTGATTGCCATGAAGGATTATGAAGAAGCCCTCAGGGATGTCAGGGCAATTTTGACATTGGACGCAAATTATATGATGTTCTATGGGAATATGCATGGTAGTCGCTTGGTAGAACTCCTCCGCCCTGTTGCTCAGCAGTGGAGCCAGGCTGATTGTTNGATGCAATTGTATGACAGATGGTCTTCTGTTGATGATATTGGTTCTTTGGCTGTTGTACACCAAATGTTAGAAAATAATCCAGGGAAAAGTATTTTACGCTTTCGGCAATCTCTACTTTTATTACGGTTAAATTCTCAAAAGGCAGCCATGCGTAGTTTGCGTCTGGCTAGAAACCATTCATCTTCAGCACATGAAAGGCTTGTCTATGAAGGATGGATATTGTATGACACTGGTTATCGTGAAGAAGCTATAGCAAAGGCTGAGGAGTCCATTTCTATTCAAAGGTCGTTTGAAGCTTTCTTTCTCAAAGCTTATGCATTAGCTGACTCAAGTCTTGATTCAGAGTCTTCAAAGAACGTGATTGATCTCTTGGAGGAAGCTCTTAAATGCCCTTCAGATGGTCTTCGGAAGGGACAAGCACTAAATAATTTAGGTAGTGTGTACGTAGATTGTGAAAAGCTAGACCTTGCTGCTGACTGTTACAAGCATGCGCTTAACATCAAGCATACACGAGCACATCAGGGGTTGGCACGTGTATATCATCTTAAAAATCAGCACAAAGCGGCATATGATGAGATGACAAAGCTAATAGAAAAGGCCCAGAACAATGCATCATCTTACGAGAAACGTTCAGAATATTGTGATCGTGACATGGCAAAAAGCGATCTTAGTTTGACAACACAGTTGGATCCTCTAAGGACATATCCTTACAGATATAGGGCAGCAGTTTTGATGGATGATCATAAGGAAGTTGAAGCAATAGAAGAGCTTTCAAGGGCCATCAATTTTAAGCCAGATCTGCAACTGTTACATCTTCGAGCAGCATTTTATGATTCGATGGGTGATTGTGTTTCTACTATCCGAGATTGTGAAGCGGCCCTTTGTCTTGATCCTAGCCATACTGAGACGTTAGAGCTTTGTAATAAAGCAGGGGAGCGGATTAATGATTGAAAGTGAGAGAAACAGAAATCAATAGTCATGTTTTCTGAGTGTTCTAATGAGGACAAGGCTAATCCCGGTAACCAGTACTTCTTTGCACCTAAACGACCCAGTAATCATCAGTGCTATTTATTTATTGGATGTTATCTCAAGAAAAGGTCTGGTATATGTGCTGAATTACAGAAGGGAAAATATAAATTAGAAAGATCATCTGGATTGAAACTGAAGTGGAAATAGAGGAGCAGAATAGCTTGTAAATATATGTAATGAATTATGGTTTTGTCAACTTATGGTTCGAGTAGTGCAGATGTTGCTGCTATTTTCCAATATGCCACGGCAGCAAGGATGGTGACAAATTAACAGTTTCAGACGAAACTTGTACATGAAAGTCAATTTGTTATGCAACAGTTTTAGATATTTACCACTATATTAT

Protein Sequence

Location information (JBrowse)

Scaffold	Start	End	Strand
Scaffold00150	41812	48428	+

Gene family

Gene family	subfamily
Ubiquitin Family	BTB

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID
--	--	--	--	--

Gene Ontology

molecular_function
GO:0005515 protein binding

Pfam domain

Protein	Pfam accession	Pfam name	Alignment start	Alignment end	E-value
Glyur000150s00014554.1	PF00515.23	TPR_1	782	811	0.00083

Expression pattern

SRP053019

SRA Experiment	Description	TPM
SRR1783599	control	2.954
SRR1783600	control	2.956
SRR1783602	moderate drought stress	4.220
SRR1811619	moderate drought stress	4.393

DRP000996

SRA Experiment	Description	TPM
DRR006519	Root Summer glycyrrhizin high producing strain	1.797
DRR006520	Root Summer glycyrrhizin high producing strain	1.698
DRR006521	Root Winter glycyrrhizin high producing strain	3.391
DRR006522	Root Winter glycyrrhizin high producing strain	3.343
DRR006523	Root Summer glycyrrhizin low producing strain	2.619
DRR006524	Root Summer glycyrrhizin low producing strain	2.724
DRR006525	Leaf Summer glycyrrhizin high producing strain	6.709
DRR006526	Leaf Summer glycyrrhizin high producing strain	6.349

SRP065514

SRA Experiment	Description	TPM
SRR2867873	Salt Stress (root)	9.170
SRR2868004	Drought Stress (root)	12.568
SRR2967015	Control (root)	16.369

SRP215420

SRA Experiment	Description	TPM
SRR9715738	Leaf	24.208
SRR9715740	Leaf	31.903
SRR9715741	Leaf	27.037
SRR9715739	Root	0.408
SRR9715742	Root	4.350
SRR9715743	Root	4.557

SRP188776

SRA Experiment	Description	TPM
SRR8749027	MeJA induced 9h	1.691
SRR8749028	MeJA induced 9h	2.602
SRR8749029	MeJA induced 9h	1.146
SRR8749030	Uninduced	1.946
SRR8749031	Uninduced	5.042
SRR8749032	Uninduced	2.116

SRP175571

SRA Experiment	Description	TPM
SRR8400026	NaCl treatment - Root	10.083
SRR8400027	Control - Root	12.318