Gene detail

Gene detail information of Glyur000150s00014553.1

Functional Annotation

Database	Orthologs	E value	Annotation
TAIR	AT2G38300.1	4.00E-43	myb-like HTH transcriptional regulator family protein
NR	AES79549.2	6.92E-108	MYB-like transcription factor family protein [Medicago truncatula]
Swissprot	tr\|Q700D9\|MYBF_ARATH	2.00E-28	Putative Myb family transcription factor At1g14600
trEMBL	tr\|G7KSC8\|G7KSC8_MEDTR	3.00E-108	MYB-like transcription factor family protein {ECO:0000313\|EMBL:AES79549.2}

Sequence

Transcript Sequence

>Glyur000150s00014553.1
TTTGATTCCACCAATAATTAACAAATAGCGACAGATAGGAGACTGTTGCTTGTTTGTCTTCTTCAAATTCCAGTCTCCGAAGAAAGTGTTTGTGGGAAGAAGCTATGGAGGTGGTGGAAGAAGAAAGACATGGCTCGGAATGTTCCAAGACAAGTCCTTCTTCTATTAATGAAGAAGATGGTTGTTGTGAGATTAGTGATGAGGCCAATCATGAAGAAGANGGTGAAAGAAGCAACAACAAGAATAATGGAGGAGGGAGTTCATCAAGCAACAGCACAGTGGAAGAGAACGAGAATAATAAGAAGACATCATCATCATCAGTGAGGCCTTATGTTAGATCCAAGTTGCCTAGGCTGCGTTGGACCCCCGATCTTCATCTTCGCTTTGTTCATGCTGTTCAAAGACTTGGAGGACAAGAGAGAGCAACCCCAAAGTTGGTTCTTCAGTTGATGAATATAAAAGGTTTAAGTATTGCTCATGTTAAGAGTCATTTACAGATGTACAGGAGCAAGAAGGTAGTTGACACAAATCAAGTATTGGGTGATCATAGAGTTCTTATAGAAAGTGGAGACAGAAATGTTTATAATCTCAGCCAACTTCCCATGCTTCAAGGCTATACTCCAACCCAAACTTCATCTGCATATAGATATGGATATGGGGATGCAGCTGCTTCTCTTGCAATGTATGAAAACATGGCACATAATAGGCCTAACTTCATGGGTCGGGGTGGTTCAGTACTAAACGAATTATCTGGATCAGCTGATCAATCTGCTTATAATGGCAAAATGATGATTGAGAGGATTAATCTCCAAGGGACCAATAATAACAACAACATGATCAATTGGGGGGCTCATCATGCTCATGTTTTCCAACTGGATCATTCATCCAATTTCAGCGAACTATCAACAACTAGTACTAAAGTAGCACTCCATGAATTACCACCAAAAGTAGATAATAAATTCCTCTCATTTGGTGGTGGTGGCCATGAATCTTTATTAGGCACACAGATCAGATCATTGAGTCAGAATATTGATGATGATAATAAATTGCCAGCTGCAAATAATCTAGTGGATCATCAACTGAAGAGCTTGAAAAGGAAGGCTTCTTCAGATAATGAAGAACTTGATTTGGATCTGTCACTTAAATTGAATTCAAGGGTCAGTGGTGGTGATGATCAGAACCGTCATGAAGTTGATGATGATGATGATGATGATGAAAGCAATAATAATAATATTCTATCACTCTCTTTGTACTCTCATCATCTTAGCAGCAGCAGCAGAAGCAGGTTGTTGAAAGAAGATGAACAAGATCGTTCTAATTCTAAGGANCAAGGAGGTGGGAGGAAAAGAGGCAATAATGCTCTGGATCTGACTATATGAATGAATGGGACATATTTCTAAGGAAAAATGATTCATAGACACCTAATACCCATTTAACACCCAGAGAGAGAAAGAAA

Protein Sequence

Location information (JBrowse)

Scaffold	Start	End	Strand
Scaffold00150	28649	30664	-

Gene family

Gene family	subfamily
Transcription Factors Family	G2-like
EAR motif-containing Proteins	G2-like

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID
--	--	--	--	--

Gene Ontology

molecular_function

GO:0003677 DNA binding

GO:0003682 chromatin binding

Pfam domain

Protein	Pfam accession	Pfam name	Alignment start	Alignment end	E-value
Glyur000150s00014553.1	PF00249.26	Myb_DNA-binding	83	134	1.60E-14

Expression pattern

SRP053019

SRA Experiment	Description	TPM
SRR1783599	control	0.050
SRR1783600	control	0.077
SRR1783602	moderate drought stress	0.026
SRR1811619	moderate drought stress	0.026

DRP000996

SRA Experiment	Description	TPM
DRR006519	Root Summer glycyrrhizin high producing strain	0.000
DRR006520	Root Summer glycyrrhizin high producing strain	0.000
DRR006521	Root Winter glycyrrhizin high producing strain	0.000
DRR006522	Root Winter glycyrrhizin high producing strain	0.000
DRR006523	Root Summer glycyrrhizin low producing strain	0.000
DRR006524	Root Summer glycyrrhizin low producing strain	0.000
DRR006525	Leaf Summer glycyrrhizin high producing strain	2.872
DRR006526	Leaf Summer glycyrrhizin high producing strain	2.923

SRP065514

SRA Experiment	Description	TPM
SRR2867873	Salt Stress (root)	9.785
SRR2868004	Drought Stress (root)	8.343
SRR2967015	Control (root)	10.398

SRP215420

SRA Experiment	Description	TPM
SRR9715738	Leaf	1.832
SRR9715740	Leaf	1.364
SRR9715741	Leaf	1.120
SRR9715739	Root	0.000
SRR9715742	Root	0.000
SRR9715743	Root	0.000

SRP188776

SRA Experiment	Description	TPM
SRR8749027	MeJA induced 9h	0.195
SRR8749028	MeJA induced 9h	1.507
SRR8749029	MeJA induced 9h	0.017
SRR8749030	Uninduced	0.459
SRR8749031	Uninduced	0.000
SRR8749032	Uninduced	0.116

SRP175571

SRA Experiment	Description	TPM
SRR8400026	NaCl treatment - Root	2.292
SRR8400027	Control - Root	1.305