Gene detail

Gene detail information of Glyur000150s00014551

Functional Annotation

Database	Orthologs	Annotation
TAIR	AT2G38290.1	ammonium transporter 2
NR	XP_003623328.1	Ammonium transporter 3 member [Medicago truncatula]
COG	YP_006765569.1	ammonium transporter [Leptospirillum ferriphilum ML-04]
Swissprot	tr\|Q9M6N7\|AMT2_ARATH	Ammonium transporter 2
trEMBL	tr\|G7KSC5\|G7KSC5_MEDTR	Ammonium transporter 1 protein {ECO:0000313\|EMBL:AES79546.1}

Sequence

Transcript Sequence

>Glyur000150s00014551.1
AAGTTTTTCAAAGAAACTTTGCCTTTTTTTTTATATAGTTTTTAACCACTGCCACTTGTGGGAATCCCACAACAGTTTACCATGAAGCTTCCAAAGATTCAAACCGAGTATCCGAGTTTTCAAAAACTCATGTTTTGAAGGTACAATATGCACATGCATATAAGTTATAACCAATTAACAACACCCCACTAAAGCACAATTCCACATCTTACATGTAGCTAGCATCAAAAGAGAAGAGATCTATATATAACTGCGAACAAGGTCAAAATCAAAACTTGATCAAAACCCAATTTTGTTCAAGCAATTTTGAGGCAGAGCCATGGCTACTCCCACAGCATACCAAGAGCACCTTCCAGCATCCCCATATTGGTTAAACAAAGGGGACAACGCATGGCAGATGACAGCAGCAACACTGGTTGGTCTTCAGAGCATGCCAGGCCTTGTGATCCTCTATGCAAGCATAGTCAAAAAGAAATGGGCAGTGAACTCAGCTTTCATGGCTCTCTATGCCTTTGCAGCTGTTCTAATCTGTTGGGTCCTGTTATGTTACCGTATGGCCTTTGGTGACGAACTTCTACCCTTTTGGGGTAAAGGGGCACCAGCTTTGGGACAAAAGTTCTTAGTGAAACAAGCAAGGGTACCTGAAAGTACACACCACTTTAAGAATGGAACTGTGGAGTCACCAATGGAGGAACCCTTTTTCCCTATGGCTTCACTTGTGTATTTTCAGTTCACTTTTGCTGCTATTACCCTCATCTTGCTTGCTGGGTCTGTGCTTGGTAGGATGAACATCAAGGCTTGGATGGCTTTTGTGCCTCTCTGGCTCATCTTTTCTTATACTGTNGGTGCTTTTAGCCTCTGGGGTGGTGGGTTTCTTTACCACTGGGGTGTTATTGATTACTCTGGTGGCTATGTCATTCACCTCTCCTCTGGAATTGCTGGCTTCACTGCTGCTTATTGGGTTGGGCCAAGGTTAAAGAGTGATAGGGAGAGGTTCCCACCAAACAACGTGTTGCTGATGCTTGCGGGTGCAGGGTTGTTGTGGATGGGGTGGTCAGGGTTCAATGGTGGAGCACCATATGCAGCAAACATTGCAGCCTCTGTTGCAATGCTCAACACAAACATTTGTGCAGCAACTAGCCTCCTTGTGTGGACAACTCTTGATGTCATCTTCTTTGGGAGACCCTCTGTGATTGGTGCNGTTCAGGGNATGATGACTGGTCTTGCATGCATCACCCCAGGAGCAGGGCTTGTGCAATCNTGGGCGGCTATAGTGATGGGAATACTATCTGGGAGCATTCCGTGGGTCTCCATGATGATCCTCCATAAAAAGTCTACCCTGCTACAGCAGGTAGATGACACCCTTGGTGTATTTCACACACATGCTGTGGCTGGTCTTTTGGGTGGCCTCCTCACAGGGCTCTTCGCAGAGCCAGCCCTTTGTAGACTATTGTTGCCAGTGACCAACTCAAGGGGTGCATTCTATGGTGGAGGTGGCGGTGTGCAGTTTCTGAAGCAGTTGGTGGCAGCCATGTTCATTATTGCATGGAACATAGTCTCCACCACCATCATTCTCCTTGTCATACAATTGTTCATACCCTTGAGGATGCCGGACGAGCATTTGGAGATCGGCGACGACGCGGTCCACGGCGAGGANGCTTATGCCCTTTGGGGTGATGGAGAAAAATATGATGCAACAAGGCATGGTTCCTTAAACACTGGCAACACTATGGTATCCCCTTATGTTAATGGTGCAAGAGGTGTGACTATAAATTTATGATCAGTCACAATTTTGAGACTCTATCAATCGTATGTGTAATGATGTGCTGATTTTGTTCGCACATGTGTGGAAAGTTGATCTAATACATGATATATGGTTAGCAAATGTATGATTTAGATGGGTGGTGTAAAGAGAATTTTGATCTCCATCAAAGAGAATTTCTCTAGTGTTTAGTCAATAAGGTAGTGCTTTTTGACTTTTGTAACTTTAGTCATTCAGCTGTTTGGTATTTCGTGCTTGTCATTTAATTTAGACTTAAAAATAATTTTAGTCCCTGTAAATATATCTATTTTTTGTTTTCGTTCTTGTAAAAAAAATTTACTTTTTCATCCCTGTAATATTCACTGTTTTCATTTTTTGTCCTTGCCGTCAGTTGCCGATACAA

Protein Sequence

Location information (JBrowse)

Scaffold	Start	End	Strand
Scaffold00150	18311	22664	-

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID
--	--	--	--	--

Gene Ontology

biological_process

GO:0015696 ammonium transport

GO:0072488 ammonium transmembrane transport

cellular_component
GO:0016020 membrane

molecular_function
GO:0008519 ammonium transmembrane transporter activity

Pfam domain

Protein	Pfam accession	Pfam name	Alignment start	Alignment end	E-value
Glyur000150s00014551.1	PF00909.16	Ammonium_transp	24	448	1.10E-77

Expression pattern

SRP053019

SRA Experiment	Description	TPM
SRR1783599	control	12.697
SRR1783600	control	12.807
SRR1783602	moderate drought stress	25.212
SRR1811619	moderate drought stress	24.966

DRP000996

SRA Experiment	Description	TPM
DRR006519	Root Summer glycyrrhizin high producing strain	51.865
DRR006520	Root Summer glycyrrhizin high producing strain	50.382
DRR006521	Root Winter glycyrrhizin high producing strain	35.256
DRR006522	Root Winter glycyrrhizin high producing strain	34.572
DRR006523	Root Summer glycyrrhizin low producing strain	50.218
DRR006524	Root Summer glycyrrhizin low producing strain	51.087
DRR006525	Leaf Summer glycyrrhizin high producing strain	11.309
DRR006526	Leaf Summer glycyrrhizin high producing strain	11.371

SRP065514

SRA Experiment	Description	TPM
SRR2867873	Salt Stress (root)	24.432
SRR2868004	Drought Stress (root)	38.777
SRR2967015	Control (root)	64.565

SRP215420

SRA Experiment	Description	TPM
SRR9715738	Leaf	92.866
SRR9715740	Leaf	104.793
SRR9715741	Leaf	185.907
SRR9715739	Root	188.069
SRR9715742	Root	286.915
SRR9715743	Root	263.065

SRP188776

SRA Experiment	Description	TPM
SRR8749027	MeJA induced 9h	20.150
SRR8749028	MeJA induced 9h	9.736
SRR8749029	MeJA induced 9h	11.376
SRR8749030	Uninduced	5.990
SRR8749031	Uninduced	0.944
SRR8749032	Uninduced	4.705

SRP175571

SRA Experiment	Description	TPM
SRR8400026	NaCl treatment - Root	28.026
SRR8400027	Control - Root	55.018