Gene detail

Gene detail information of Glyur000149s00009586

Functional Annotation

Database	Orthologs	E value	Annotation
TAIR	AT5G50130.1	6.00E-138	NAD(P)-binding Rossmann-fold superfamily protein
NR	XP_003601227.1	0	Retinol dehydrogenase [Medicago truncatula]
COG	YP_002462215.1	7.00E-54	short-chain dehydrogenase/reductase SDR [Chloroflexus aggregans DSM 9485]
Swissprot	tr\|Q6RVV4\|TIC32_PEA	1.00E-91	Short-chain dehydrogenase TIC 32, chloroplastic
trEMBL	tr\|G7J4W0\|G7J4W0_MEDTR	0	NAD(P)-binding rossmann-fold protein {ECO:0000313\|EMBL:AES71478.1}

Sequence

Transcript Sequence

>Glyur000149s00009586.1
ATGAAGGCAACACTGAGATACTTGGCAGGAATTGCAGGCCCAAGTGGTTTTGGCTCAAACTCAACCGCTGAGCAGGTTACTCAAAATTGTTCTCGCTTCCTTCCTTCCGATCTAACCGCTCTCATCACTGGGGCGACTTCTGGTATTGGAGCTGAAACAGCAAGGGTGTTAGCAAAGAGAGGGGTGAGAGTAGTGATTGGTGCAAGAGACATGAAGAAGGGGAGGGAAGTGAGAGACAAGATACAAAAGGAGAGTCCAAATGCTGAGGTTGTTCTGTTGGAGATCGATCTTAGCTCTTTCGGTTCTGTACAGAGATTTTGTTCCGAATTTTTAGCTTTAGATCTTCCACTCAATATTCTCATAAACAATGCAGGGGTGTTCTCTCAAAACTTGGAGTTCTCTGAAGAGAAAATTGAGATGACATTTGCTACAAATTACTTAGGTCATTTTTTGTTAACAGAAATTTTATTAGACAAAATGATAGAAACGGCAGAGAAGACAGGTATTCAAGGAAGAATAATAAACGTTTCTTCTGTCATCCATAGCTGGGTGAAGAGAGATGGTTTTTGTTTCAACGACATACTCAATGGGAAAAACTATAATGGAACACGTGCTTATGCTCAGTCAAAATTGGCAAACATTTTGCATGCCAAGGAAATAGCCAGACAACTCAAGGCAAGGAATGCAAGAGTAACTATCAATGCAGTACATCCGGGTATTGTGAAGACTGGAATTATTAGAGCTCATAAGGGCTTATTAACAGATTCCATATTTTTCCTTGCATCAAAGTTACTCAAATCGACATCACAGGGTGCATCAACTACGTGTTATGTGGCTCTGAGTCCAAAAACAGAAGGAATAAGTGGGAAGTACTTTTCAGATTGTAATGAGAGTAAGTGTTCAAGCCTAGCAAATGATGAATGGGAAGCTCAAAAGCTATGGAACAACACCCATGCCTTGCTTCACAAACGACTACATCAAGCAACAATTTGAAGTGTTAATTTCTTCCCNTTTTTTTCTAGACCCAGTTGTCATGTATATTTAGATTATTCATTTACGTAAAGTTGTAGGTAAAAGAGGCAACCTGAAATAACATATATTCAAGGGGCTTTACTGTTAGTAACCCCTNCCCTGTGTAGCTCCACTTTGATTTTGTTGTACAAATAAGAGAGCATAAAGCATAAAATCTCTCTNCTATAATAACAAAGTGATAGTTGATATACTCTACAAAGCAAATATGAGAGCCAAGACTGCTATATTCATTGCAATCAATTACAATTATTATTCAAAAGAAAATTACAGGCTATCACATTTGTTTGTTGTTGGTAAAAGCATCTATATGACACATTGAGATTGCAACTGCCCACAGGATAGATAAGGTGCAGCCAACAAAAAAAAAGAAAAGGATCATCCGGATTCATTTCCGGATACAGGGCTTCATTTACCATTCCAAAACAAGATATCAGCACATAAATGACTGATATTTTATTGAAGAATAATACCAACTTAGCAACAATACAAAATATTAACACGAACACACACAAATATGACACAAGTAATAATACATGAAAAAAGTATATACTAATCTATTTATACACGGATATGTCTTGACTTAGATGTATCTTGACTTATGTCAATTTAATATAGGAAGAGTGCTAACAACACACTCTCTGACACTCTCTTCCAACACATTTTTTAAACTTGTGCACACCATTAAAAAGTTTATCTAAATTTGCTAGTATTGATACAGGTCATGGAAGAAAGAGTGAAGCCAACCCAACTCATATGGGNTATTGCTATTAACTGTAGAGATCATCATCTCCCTCAGTGACAGATGAAAAGGGGTCAGAGGCCCCTGTTGTAGCTGTGGCATTCTCCTTTCGATCTGGAAACCGAAAATCTGATCCAATTCCACGAGACTGTTGCAATGTCTGAGCAAAGAGTTGGTACTTCCTGATGTCAGCGTCACTGACACTCCGCCTAGCAAACTTCATTGACTCCTCAAAGTGAGCCGGTTTTATCTCAGCGACATCTTCAATTTCATCTTCTTCCATAGCTTCAGGGTTCTCTCCNTTTCTTCTCTCCTTCTCAATATCCTATTAAGCAATTGCACAAATGAGTCTCTAACTTGTACAAAGGACTAAAATAAAAAGAAAGATATACATTACATATGTAAGTTCAACAAAACATTTCCAGACATGTTTTTTTAGGGACAAACATGCATGAATGTTATTGATGGTTTAATTTAGTGTGAGAAAATTTATAATCTATGACATAGACAAGGCAAATACTTAGAGGGTGCTAACTCTCTTTGATTGAGTGAAATTCACTGTGCATTCGGATCCCATGTCCTATTTGATTGGATTTATTCCCATAGTGATGGAACCCATGTGAATTTTATCAAACCACAGANAGTATATTAGAGAGTGTGTTGCTANCATTTATTTGTATCATCTATATTCATACCTTCTCAATNTCTTCTCTAATGGCATATTTGCACGCTCGTTGACAGATTTCCGTAATGTCTGCACCACTAAATCCATGAGTAAAACTGGCAAGAGCTGACAGGTCAACATCCTTGGAGATTGGTGACTTCCTCAAGCATGCCTTAAAGATTTGAAGGCGCGAGCTCTCGTCTGGTAAAGGGATGTAAAGGAGTTGGTCCAAGCGTCCAGGCCTGAGCAATGCAGGGTCTATGATGTCTGGTCTGTTTGTTGCCCCAATGATGAAAACCGTTTTCTTAGCTGTCATGCCATCCATTTCTGTTAATAGTTGGTTCAACACCCTATCTGCAGCACCACCAGCATCCCCTACAGAACTGCCTCGCTGAAGATTGCGAATAAATATTCAATGAATTAGATTTCACAACTCTTAAGAATTTTGGTCAAGGGCCTAAGTCNAACTCAACATCACAAAACCGGCTAATAAAATAAGGACTGCCCAAGCCTTATAATAAGGACTACAACCAGTCATGATCAAATTCATGTCCAGAATCCATATATTAGTTGGGTTTGGTGCCTTACCTGGGTTGCAATAGAATCAAGTTCGTCGAAGAAAAGCACACACGGAGCTGATTGACGGGCCTTGTCGAATATCTCACGAACATTTGCCTCACTTTCACCAAACCACATTGTCAGCAGCTCGGGTCCCTTAACGCTTATGAAGTTGGCTTGGCATTCATTAGCAATTGCTTTTGCTAGCAGGGTTTTCCCACAACCAGGAGGTCCATAAAAGAGAACACCTTTAGAAGGTGACATGCCAAATTTCTCAAACTTCTCAGGATGTTCCACTGGGTATTGAACAGTCTACAAGCAGCAAAAGAATATTCCTTACATTAGTTTGCAAAAGATACAACGCATTATTTGAGATAAGATGGAGGATATCAAAATTCAAAAGCAAGTTTGAACCTCCTGAAGCTCCCTTTTGACATTCTCTAAGCCTCCAATATCATCCCAAGAAACATTTGGAACCTC

Protein Sequence

Location information (JBrowse)

Scaffold	Start	End	Strand
Scaffold00149	289813	297708	-

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID
--	--	--	--	--

Gene Ontology

biological_process
GO:0008152 metabolic process

molecular_function
GO:0016491 oxidoreductase activity

Pfam domain

Protein	Pfam accession	Pfam name	Alignment start	Alignment end	E-value
Glyur000149s00009586.1	PF00106.20	adh_short	39	182	6.50E-22

Expression pattern

SRP053019

SRA Experiment	Description	TPM
SRR1783599	control	13.000
SRR1783600	control	12.748
SRR1783602	moderate drought stress	21.681
SRR1811619	moderate drought stress	22.138

DRP000996

SRA Experiment	Description	TPM
DRR006519	Root Summer glycyrrhizin high producing strain	29.710
DRR006520	Root Summer glycyrrhizin high producing strain	31.033
DRR006521	Root Winter glycyrrhizin high producing strain	54.454
DRR006522	Root Winter glycyrrhizin high producing strain	53.267
DRR006523	Root Summer glycyrrhizin low producing strain	29.945
DRR006524	Root Summer glycyrrhizin low producing strain	30.439
DRR006525	Leaf Summer glycyrrhizin high producing strain	7.579
DRR006526	Leaf Summer glycyrrhizin high producing strain	7.452

SRP065514

SRA Experiment	Description	TPM
SRR2867873	Salt Stress (root)	14.075
SRR2868004	Drought Stress (root)	20.910
SRR2967015	Control (root)	19.835

SRP215420

SRA Experiment	Description	TPM
SRR9715738	Leaf	4.517
SRR9715740	Leaf	7.106
SRR9715741	Leaf	4.111
SRR9715739	Root	6.060
SRR9715742	Root	19.494
SRR9715743	Root	17.203

SRP188776

SRA Experiment	Description	TPM
SRR8749027	MeJA induced 9h	19.150
SRR8749028	MeJA induced 9h	21.889
SRR8749029	MeJA induced 9h	14.029
SRR8749030	Uninduced	8.397
SRR8749031	Uninduced	1.817
SRR8749032	Uninduced	4.371

SRP175571

SRA Experiment	Description	TPM
SRR8400026	NaCl treatment - Root	17.310
SRR8400027	Control - Root	16.447