Gene detail

Gene detail information of Glyur000149s00009585

Functional Annotation

Database	Orthologs	Annotation
TAIR	AT5G03340.1	ATPase, AAA-type, CDC48 protein
NR	XP_010248585.1	PREDICTED: cell division control protein 48 homolog A-like isoform X2 [Nelumbo nucifera]
COG	NP_248150.1	cell division protein CDC48 [Methanocaldococcus jannaschii DSM 2661]
Swissprot	tr\|P54774\|CDC48_SOYBN	Cell division cycle protein 48 homolog
trEMBL	tr\|I1JXA0\|I1JXA0_SOYBN	Uncharacterized protein {ECO:0000313\|EnsemblPlants:GLYMA04G35950.1}

Sequence

Transcript Sequence

>Glyur000149s00009585.1
ACACGAAAGCATAACAAGTCAAGGAGGTGAGGGGGGTGAGACATAAGAGCAAGGTGTGTGCGTGGATGTTGATGATGGACACTCGGATGCAGTTCACTGGACTTGAGTGACATCAATCACTCATCATCATGTCCAAACAACCTAACTCTGTTTTTTTTAAAACTATGCATGTATGTATGTCTTATTCCCCTAATAAAGCTAAAGCTACATACCATGCCATAAGACACTCAAGTAATCACATACCATATTACTATTACAAAACCCTGCTTTTACAGCAAGAACCACGAAGCAAAGCAAAAGCTTTCACAAGCCATGGCGGATCCAACCTCACCTAACCCTGATAATAAGCAGGGTCAATCCTCTTCTGACCCGAAAAGTAATAAGAAGGATTATTCCACGGCAATATTAGAACGCAAGAAGGCTCCTAATCGTCTTGTTGTTGATGAAGCAACCAATGATGACAATTCCGTAGTTACTTTACACCCTACCACAATGGAAGAGCTTCAGTTTTTCAGGGGCGACACTGTTCTGATAAAGGGAAAGAAGCGAAAAGACACGGTTTGCATTGTTCTTGTTGATGAACATTGTGATGAACCAAAAATAAGGATGAACAAAGTTGTAAGGGCTAATCTTAGAGTGAGACTTGGAGATGTTGTCTCTGTCCATCAATGTCCTGATGTCAAGTATGGGAAGCGAGTTCACATCCTTCCAATTGATGACACTATTGAGGGTGTAACTGGCAGCTTGTTTGATGCATATCTGAAGCCATACTTTCTGGAGTCATACCGGCCTGTGAGGAAAGGGGACTTGTTTCTTGTTAGGGGTGGAATGCGAAGTGTTGAGTTTAAGGTCATAGAGACTGATCCTGGTGAATATTGTGTTGTGGCACCTGATACTGAAATCTTCTGTGAGGGAGAACCCGTCAAAAGGGAAGATGAGGAGAGGTTAAATGAAGTTGGCTATGATGATGTTGGTGGTGTTAGGAAACAAATGGCTCAAATCCGCGAGCTAGTAGAGCTTCCACTTAGACACCCACAACTCTTCAAATCAATTGGTGTTAAGCCCCCAAAAGGAATATTGCTCTATGGTCCACCTGGTTCTGGAAAGACTCTGATTGCAAGAGCAGTGGCTAATGAGACAGGTGCATTCTTCTTTCTGATCAATGGGCCAGAAATAATGTCGAAGCTGGCCGGTGAGAGTGAAAGCAATCTGAGGAAGGCATTTGAAGAAGCCGAAAAGAATTCCCCTTCCATCATTTTCATTGATGAATTAGACTCAATTGCTCCAAAGAGAGAAAAGACTCACGGAGAAGTGGAGAGGCGTATTGTTTCGCAGCTTTTGACTCTAATGGATGGCCTNAAGTCTCGATCACACGTTATCGTTATCGGAGCTACAAATAGGCCCAACAGTATTGATCCNGCTCTGAGAAGGTTTGGAAGATTTGATAGGGAGATTGACATTGGTGTACCGGATGAAGTTGGAAGGCTGGAGGTTCTTAGAATTCATACAAAGAACATGAAACTTTCGGACAATGTTGATCTTGAAAGGGCTGCTAGAGATACCCATGGTTATGTAGGATCAGATCTTGCTGCTCTTTGCACTGAGGCTGCACTACAGTGTATCCGGGAAAAAATGGATGTGATTGACTTAGAGGATGAAACAATCGATGCTGAGGTGTTGAATTCNATGGCAGTGACCAATGAACATTTTCAAACTGCTTTAACTTCTTCAAACCCATCTGCCCTGCGTGAAACAGTAGTGGAGGTTCCAAATGTTTCTTGGGATGATATTGGAGGCTTAGAGAATGTCAAAAGGGAGCTTCAGGAGACTGTTCAATACCCAGTGGAACATCCTGAGAAGTTTGAGAAATTTGGCATGTCACCTTCTAAAGGTGTTCTCTTTTATGGACCTCCTGGTTGTGGGAAAACCCTGCTAGCAAAAGCAATTGCTAATGAATGCCAAGCCAACTTCATAAGCGTTAAGGGACCCGAGCTGCTGACAATGTGGTTTGGTGAAAGTGAGGCAAATGTTCGTGAGATATTCGACAAGGCCCGTCAATCAGCTCCGTGTGTGCTTTTCTTCGACGAACTTGATTCTATTGCAACCCAGGATATTGAGAAGGAGAGAAGAAANGGAGAGAACCCTGAAGCTATGGAAGAAGATGAAATTGAAGATGTCGCTGAGATAAAACCGGCTCACTTTGAGGAGTCAATGAAGTTTGCTAGGCGGAGTGTCAGTGACGCTGACATCAGGAAGTACCAACTCTTTGCTCAGACATTGCAACAGTCTCGTGGAATTGGATCAGATTTTCGGTTTCCAGATCGAAAGGAGAATGCCACAGCTACAACAGGGGCCTCTGACCCCTTTTCATCTGTCACTGAGGGAGATGATGATCTCTACAGTTAATAGCAATANCCCATATGAGTTGGGTTGGCTTCACTCTTTCTTCCATGACCTGTATCAATACTAGCAAATTTAGATAAACTTTTTAATGGTGTGCACAAGTTTAAAAAATGTGTTGGAAGAGAGTGTCAGAGAGTGTGTTGTTAGCACTCTTCCTATATTAAATTGACATAAGTCAAGATACATCTAAGTCAAGACATATCCGTGTATAAATAGATTAGTATATACTTTTTTCATGTATTATTACTTGTGTCATATTTGTGTGTGTTCGTGTTAATATTTTGTATTGTTGCTAAGTTGGTATTATTCTTCAATAAAATATCAGTCATTTATGTGCTGATATCTTGTTTTGGAATGGTAAATGAAGCCCTGTATCCGGAAATGAATCCGGATGATCCTTTTCTTTTTTTTTGTTGGCTGCACCTTATCTATCCTGTGGGCAGTTGCAATCTCAATGTGTCATATAGATGCTTTTACCAACAACAAACAAATGTGATAGCCTGTAATTTTCTTTTGAATAATAATTGTAATTGATTGCAATGAATATAGCAGTCTTGGCTCTCATATTTGCTTTGTAGAGTATATCAACTATCACTTTGTTATTATAGNAGAGAGATTTTATGCTTTATGCTCTCTTATTTGTACAACAAAATCAAAGTGGAGCTACACAGGGNAGGGGTTACTAACAGTAAAGCCCCTTGAATATATGTTATTTCAGGTTGCCTCTTTTACCTACAACTTTACGTAAATGAATAATCTAAATATACATGACAACTGGGTCTAGAAAAAAANGGGAAGAAATTAACACTTCAAATTGTTGCTTGATGTAGTCGTTTGTGAAGCAAGGCATGGGTGTTGTTCCATAGCTTTTGAGCTTCCCATTCATCATTTGCTAGGCTTGAACACTTACTCTCATTACAATCTGAAAAGTACTTCCCACTTATTCCTTCTGTTTTTGGACTCAGAGCCACATAACACGTAGTTGATGCACCCTGCAAAACACGCATTAATATGAATACCACCGGTATAAAGGGCGGCTTAGTGCACTAGGCTCCCACCATGTGGGCGGCTTAGTGCACTAGGCTTCCACCA

Protein Sequence

Location information (JBrowse)

Scaffold	Start	End	Strand
Scaffold00149	286661	292575	+

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID
--	--	--	--	--

Gene Ontology

molecular_function
GO:0005524 ATP binding

Pfam domain

Protein	Pfam accession	Pfam name	Alignment start	Alignment end	E-value
Glyur000149s00009585.1	PF02359.13	CDC48_N	40	122	1.20E-24
Glyur000149s00009585.1	PF02933.12	CDC48_2	143	205	6.20E-11
Glyur000149s00009585.1	PF00004.24	AAA	255	384	5.90E-48
Glyur000149s00009585.1	PF00004.24	AAA	528	603	8.70E-29

Expression pattern

SRP053019

SRA Experiment	Description	TPM
SRR1783599	control	49.200
SRR1783600	control	49.670
SRR1783602	moderate drought stress	68.619
SRR1811619	moderate drought stress	68.600

DRP000996

SRA Experiment	Description	TPM
DRR006519	Root Summer glycyrrhizin high producing strain	71.481
DRR006520	Root Summer glycyrrhizin high producing strain	69.635
DRR006521	Root Winter glycyrrhizin high producing strain	124.215
DRR006522	Root Winter glycyrrhizin high producing strain	120.599
DRR006523	Root Summer glycyrrhizin low producing strain	65.734
DRR006524	Root Summer glycyrrhizin low producing strain	65.447
DRR006525	Leaf Summer glycyrrhizin high producing strain	5.848
DRR006526	Leaf Summer glycyrrhizin high producing strain	5.751

SRP065514

SRA Experiment	Description	TPM
SRR2867873	Salt Stress (root)	29.931
SRR2868004	Drought Stress (root)	38.164
SRR2967015	Control (root)	38.549

SRP215420

SRA Experiment	Description	TPM
SRR9715738	Leaf	2.647
SRR9715740	Leaf	4.691
SRR9715741	Leaf	3.836
SRR9715739	Root	8.781
SRR9715742	Root	49.660
SRR9715743	Root	39.354

SRP188776

SRA Experiment	Description	TPM
SRR8749027	MeJA induced 9h	21.362
SRR8749028	MeJA induced 9h	54.311
SRR8749029	MeJA induced 9h	14.754
SRR8749030	Uninduced	9.292
SRR8749031	Uninduced	3.279
SRR8749032	Uninduced	7.116

SRP175571

SRA Experiment	Description	TPM
SRR8400026	NaCl treatment - Root	39.055
SRR8400027	Control - Root	35.124