Gene detail information of Glyur000149s00009584 |
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| TAIR | AT5G63080.1 | 3.00E-136 | 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein |
| NR | XP_004501892.1 | 0 | PREDICTED: jmjC domain-containing protein 4-like isoform X1 [Cicer arietinum] |
| COG | YP_632582.1 | 4.00E-16 | JmjC domain-containing protein [Myxococcus xanthus DK 1622] |
| Swissprot | tr|Q67XX3|FB252_ARATH | 8.00E-13 | F-box protein At5g06550 |
| trEMBL | tr|G7J4W1|G7J4W1_MEDTR | 0 | Transcription factor, putative {ECO:0000313|EMBL:AES71479.2} |
Sequence
| Transcript Sequence |
|---|
| Protein Sequence |
|---|
Location information (JBrowse)
| Scaffold | Start | End | Strand |
|---|---|---|---|
| Scaffold00149 | 281040 | 286048 | - |
Gene family
| Gene family | subfamily |
|---|---|
| Transcription Factors Family | Jumonji |
KEGG pathway
| KO | Enzyme | Enzyme ID | pathway | mapID |
|---|---|---|---|---|
| -- | -- | -- | -- | -- |
Gene Ontology
| Not hits found. |
Pfam domain
| Protein | Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|---|
| Glyur000149s00009584.1 | PF13621.1 | Cupin_8 | 24 | 273 | 1.60E-23 |
| Glyur000149s00009584.2 | PF13621.1 | Cupin_8 | 24 | 273 | 1.60E-23 |
Expression pattern
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR1783599 | control | 1.492 |
| SRR1783600 | control | 1.475 |
| SRR1783602 | moderate drought stress | 2.315 |
| SRR1811619 | moderate drought stress | 2.326 |
| SRA Experiment | Description | TPM |
|---|---|---|
| DRR006519 | Root Summer glycyrrhizin high producing strain | 2.838 |
| DRR006520 | Root Summer glycyrrhizin high producing strain | 2.779 |
| DRR006521 | Root Winter glycyrrhizin high producing strain | 5.374 |
| DRR006522 | Root Winter glycyrrhizin high producing strain | 5.319 |
| DRR006523 | Root Summer glycyrrhizin low producing strain | 2.169 |
| DRR006524 | Root Summer glycyrrhizin low producing strain | 2.304 |
| DRR006525 | Leaf Summer glycyrrhizin high producing strain | 1.300 |
| DRR006526 | Leaf Summer glycyrrhizin high producing strain | 1.262 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR2867873 | Salt Stress (root) | 5.343 |
| SRR2868004 | Drought Stress (root) | 5.810 |
| SRR2967015 | Control (root) | 4.742 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR9715738 | Leaf | 1.515 |
| SRR9715740 | Leaf | 1.845 |
| SRR9715741 | Leaf | 1.869 |
| SRR9715739 | Root | 0.711 |
| SRR9715742 | Root | 1.486 |
| SRR9715743 | Root | 1.517 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8749027 | MeJA induced 9h | 3.369 |
| SRR8749028 | MeJA induced 9h | 3.531 |
| SRR8749029 | MeJA induced 9h | 1.410 |
| SRR8749030 | Uninduced | 1.198 |
| SRR8749031 | Uninduced | 0.323 |
| SRR8749032 | Uninduced | 0.284 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8400026 | NaCl treatment - Root | 7.325 |
| SRR8400027 | Control - Root | 6.840 |