Gene detail

Gene detail information of Glyur000149s00009578

Functional Annotation

Database	Orthologs	E value	Annotation
TAIR	AT4G20140.1	0	Leucine-rich repeat transmembrane protein kinase
NR	XP_007138043.1	0	hypothetical protein PHAVU_009G176400g [Phaseolus vulgaris]
COG	YP_004775215.1	1.00E-54	RHS repeat-associated core domain-containing protein [Cyclobacterium marinum DSM 745]
Swissprot	tr\|C0LGQ5\|GSO1_ARATH	0	LRR receptor-like serine/threonine-protein kinase GSO1 (Precursor)
trEMBL	tr\|V7AWK8\|V7AWK8_PHAVU	0	Uncharacterized protein {ECO:0000313\|EMBL:ESW10037.1}

Sequence

Transcript Sequence

>Glyur000149s00009578.1
ATGGGTAGTTCCATTTGCATGTGCAATAATTTCATTCTACTATTGACCATAGTGTATGCTGCTGTTTTAGTTGCAACAACTCTAGGAGACAATACAACAGATTCAGATTCCTATTGGCTTCTAAGGATTAAATCAGAACTGATTGATCCATTAGGAGCCCTTAGGAACTGGTCTCCAACAACTCATGTATGTAGCTGGAATGGACTAACATGTGCTGTTGATCAGACACACATTATAGGCCTCAATTTGTCAGGTTCAGGAATATCAGGTTCCATTTCANTTGAGTTCAGTCACCTCATTTCTCTTCAAACACTTGACTTGTCCTCAAATTCCCTTACTGGTTCAATCCCTTCTGAGCTTGGTCAGCTTCGAAATCTAAGAACACTGCTACTATACTCAAATTCTCTCTCTGGCAACATTCCTTCAGAGATAGGTAATTTGAGCAGGTTGCAAGTTCTTAGAGTAGGGGATAACATGTTGTTGAGAGGTGAAATCACACCCAGTATTGGAAACTTGAGTGAGTTGACAGTGTTGGGACTAGCCAACTGCAACTTGAATGGAAGCATACCCTTTGAGATTGGTAACTTGAAGCATCTAATATCTCTTGATTTGCAAGGGAACAGTTTTAATGGCCTCATACCCCAAGAGATTCAAGGCTGTGAAGAGCTCCAAAACTTTGCAGCATCAAACAACATGCTTGAAGGTGACATACCCTCCTCCATAGGGTCTCTCAAATCATTGACAATTCTGAATCTTGCCAATAACAGCTTATCTGGTTCAATTCCCACTTCCTTGAGTCTTCTCTCCAGCTTGACATACCTGAATTTGCTTGGAAACAAACTAGATGGGGTAATTCCTTCAGAACTTAACAGTTTGAGCCAGCTACAGAAGCTTGACTTGTCCAGAAACAGCCTTTCTGGATCACTAACCCTCCTTAATACCAAACTAGAGAATCTTGAAACTCTTGTTCTGTCTGATAATGCTTTAACAGGTAGTATTCCAAGTAACTTTTGCCTCAGAGGTTCAAAACTTGAGCAACTGTTCTTGGCTAGGAATAAGCTTTCTGGAAGGTTTCCCTTGGAGCTACTCAACTGCTCCTCAATCCAACAGTTGGACCTTTCTGATAACACCTTTGAAGGTGAACTTCCAACCAGCCTGGACAAGCTACAGAACCTCACAGATCTTGTACTCAACAACAACAGCTTCATTGGATCTCTACCTCCTGAAATTGGAAACATTAGTAGCTTGAAAGGCCTTTTCTTGTTTGGTAACTTTTTCACAGGAAAAATCCCTGTGGAGATTGGAAGGCTCCAGAGATTGAACACCATTTACCTCTATGATAACCAGATGTCTGGACCTATACCAAGAGAGTTAACAAACTGCACAAGTTTAAGAGAAATTGACTTCTTCGGAAACCATTTTGAAGGGTCCATTCCAGAGACTATAGGCAAGCTCAAGCACTTAACTGTTCTCCATTTAAGGCAGAATGAGTTGTCAGGTCCAATCCCACCAAGCATGGGGCACTGTAAAAGGCTTCAGATATTAGCATTAGCAGATAACAAGTTGACAGGTTCCATCCCTCCCACATTCAGTTACCTTTCAGAACTTAGTACCATTACCCTTTACAACAACTACTTTGAAGGACCTCTTCCTTTTTCACTCTCTCATCTCAGAAACCTTAGAATCATAAATTTCTCCAATAACAAGTTCAGTGGAAATATCCNTCCTCTGACTGGTTCAAATTCTCTCACAGTTTTGGACTTGACAAACAACAGCTTCTCAGGTCCCATNCCTTCTATTCTAGCCAACTCAAGAGATCTCACACGTCTCAGACTTGCACACAATTACCTCACAGGAAGCATTCCTTCTGAATTTGGCCAGCTTACTGAGCTAAACTTCCTTGATTTATCATTCAACAATTTGACAGGAGATGTGCCACCTCAGCTCTCAGAATGCAAGAAAATTGAACACCTTCTGCTGAATAATAACAAATTNACAGGTGAGATGTCTCCATGGTTGGGAAACTTACAAGAACTTGGTGAGCTAGATCTCTCATTCAATAAATTCCATGGAAGGGTTCCTTCTGAGATTGGTGACTGCTCAAAACTACTCAAGCTTTCTCTCCATCACAACAATTTCTCAGGTGAAATCCCACAAGAGATTGGAAACCTCACTTCTCTCAATGTCCTCAACTTGCAAAGGAACAGTCTCACTGGCCTCATTCCATCAACAATTCAGCAATGCAAGAAGCTGTATGAGCTCAGTCTCTCAGATAACACCCTAACAGGTGCTATACCAGTTGAGCTAGGTACTATCACTGAGTTGCAAGTCACATTGGATTTGAGTAACAACCTCTTATCCTGTGAGATTCCACCATCTCTTGGGAATCTCATGAAGCTAGAAAGACTTGATCTTTCTTTCAATCAACTTCATGGGCAAGTTCCTCCTTCACTTGGTAAACTCACAAGCCTGCATGTTTTAAACCTCTCAAATAACCATCTTCAGGGTCACATTCCTTTAACCTTATCAGGGTTCCCACCAAGCTCATTCCTTAATAATGATCATCACTTGTGTGGCTCCCCATTAGNACTGTGCTCAGAAGCCTCTGGGAAGAAGCAAATGCAACTGTCAAACACAGAAGTTGCAGCAATCATAGTTGCCATTGTGCTCACTTCCACAGTGATATGCTTAGTAATGTTGTACATAATGTTGAGGATTTGGTGCAACTGGAAAAATGTAGCCATTTCATCAAGTGAAGATGGTAGTGATTGTAGTATGGCTGAGGAGAAGATAGTAAAAGAGAGTAGATGGGGCCATGCTGATCAGAAGACAAGGAATGGAGAGTATTGGAATATGAATTCCTTTGGGTTGATTCCTTCACCAGATAAGCTGAATTCAGTAACAACTTACACTTGTAATTTCAAAATGGATGCAGAAGCCATGTAG

Protein Sequence

>Glyur000149s00009578.1
MGSSICMCNNFILLLTIVYAAVLVATTLGDNTTDSDSYWLLRIKSELIDPLGALRNWSPTTHVCSWNGLTCAVDQTHIIGLNLSGSGISGSISXEFSHLISLQTLDLSSNSLTGSIPSELGQLRNLRTLLLYSNSLSGNIPSEIGNLSRLQVLRVGDNMLLRGEITPSIGNLSELTVLGLANCNLNGSIPFEIGNLKHLISLDLQGNSFNGLIPQEIQGCEELQNFAASNNMLEGDIPSSIGSLKSLTILNLANNSLSGSIPTSLSLLSSLTYLNLLGNKLDGVIPSELNSLSQLQKLDLSRNSLSGSLTLLNTKLENLETLVLSDNALTGSIPSNFCLRGSKLEQLFLARNKLSGRFPLELLNCSSIQQLDLSDNTFEGELPTSLDKLQNLTDLVLNNNSFIGSLPPEIGNISSLKGLFLFGNFFTGKIPVEIGRLQRLNTIYLYDNQMSGPIPRELTNCTSLREIDFFGNHFEGSIPETIGKLKHLTVLHLRQNELSGPIPPSMGHCKRLQILALADNKLTGSIPPTFSYLSELSTITLYNNYFEGPLPFSLSHLRNLRIINFSNNKFSGNIXPLTGSNSLTVLDLTNNSFSGPXPSILANSRDLTRLRLAHNYLTGSIPSEFGQLTELNFLDLSFNNLTGDVPPQLSECKKIEHLLLNNNKXTGEMSPWLGNLQELGELDLSFNKFHGRVPSEIGDCSKLLKLSLHHNNFSGEIPQEIGNLTSLNVLNLQRNSLTGLIPSTIQQCKKLYELSLSDNTLTGAIPVELGTITELQVTLDLSNNLLSCEIPPSLGNLMKLERLDLSFNQLHGQVPPSLGKLTSLHVLNLSNNHLQGHIPLTLSGFPPSSFLNNDHHLCGSPLXLCSEASGKKQMQLSNTEVAAIIVAIVLTSTVICLVMLYIMLRIWCNWKNVAISSSEDGSDCSMAEEKIVKESRWGHADQKTRNGEYWNMNSFGLIPSPDKLNSVTTYTCNFKMDAEAM

Location information (JBrowse)

Scaffold	Start	End	Strand
Scaffold00149	248373	251318	-

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID
--	--	--	--	--

Gene Ontology

molecular_function
GO:0005515 protein binding

Pfam domain

Protein	Pfam accession	Pfam name	Alignment start	Alignment end	E-value
Glyur000149s00009578.1	PF08263.7	LRRNT_2	35	71	2.50E-08
Glyur000149s00009578.1	PF12799.2	LRR_4	101	137	6.40E-07
Glyur000149s00009578.1	PF13855.1	LRR_8	246	305	2.40E-07
Glyur000149s00009578.1	PF00560.28	LRR_1	318	338	0.25
Glyur000149s00009578.1	PF13504.1	LRR_7	390	407	2.5
Glyur000149s00009578.1	PF00560.28	LRR_1	607	628	0.63
Glyur000149s00009578.1	PF00560.28	LRR_1	631	651	0.44
Glyur000149s00009578.1	PF00560.28	LRR_1	778	797	0.21
Glyur000149s00009578.1	PF12799.2	LRR_4	799	835	1.50E-07

Expression pattern

SRP053019

SRA Experiment	Description	TPM
SRR1783599	control	0.235
SRR1783600	control	0.237
SRR1783602	moderate drought stress	0.567
SRR1811619	moderate drought stress	0.541

DRP000996

SRA Experiment	Description	TPM
DRR006519	Root Summer glycyrrhizin high producing strain	1.030
DRR006520	Root Summer glycyrrhizin high producing strain	1.021
DRR006521	Root Winter glycyrrhizin high producing strain	1.739
DRR006522	Root Winter glycyrrhizin high producing strain	1.697
DRR006523	Root Summer glycyrrhizin low producing strain	0.300
DRR006524	Root Summer glycyrrhizin low producing strain	0.263
DRR006525	Leaf Summer glycyrrhizin high producing strain	0.221
DRR006526	Leaf Summer glycyrrhizin high producing strain	0.126

SRP065514

SRA Experiment	Description	TPM
SRR2867873	Salt Stress (root)	0.442
SRR2868004	Drought Stress (root)	0.541
SRR2967015	Control (root)	0.931

SRP215420

SRA Experiment	Description	TPM
SRR9715738	Leaf	0.077
SRR9715740	Leaf	0.050
SRR9715741	Leaf	0.000
SRR9715739	Root	0.051
SRR9715742	Root	0.398
SRR9715743	Root	0.187

SRP188776

SRA Experiment	Description	TPM
SRR8749027	MeJA induced 9h	1.674
SRR8749028	MeJA induced 9h	10.707
SRR8749029	MeJA induced 9h	0.552
SRR8749030	Uninduced	9.016
SRR8749031	Uninduced	0.338
SRR8749032	Uninduced	0.131

SRP175571

SRA Experiment	Description	TPM
SRR8400026	NaCl treatment - Root	1.066
SRR8400027	Control - Root	1.444