Gene detail

Gene detail information of Glyur000149s00009576

Functional Annotation

Database	Orthologs	E value	Annotation
TAIR	AT1G23380.1	1.00E-50	KNOTTED1-like homeobox gene 6
NR	XP_006578641.1	1.42E-92	PREDICTED: homeobox protein knotted-1-like 6-like [Glycine max]
Swissprot	tr\|Q84JS6\|KNAT6_ARATH	4.00E-73	Homeobox protein knotted-1-like 6
trEMBL	tr\|K7KKY5\|K7KKY5_SOYBN	5.00E-93	Uncharacterized protein {ECO:0000313\|EnsemblPlants:GLYMA04G35850.2}

Sequence

Transcript Sequence

Protein Sequence

Location information (JBrowse)

Scaffold	Start	End	Strand
Scaffold00149	222872	229763	+

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID
--	--	--	--	--

Gene Ontology

biological_process
GO:0006355 regulation of transcription, DNA-templated

cellular_component
GO:0005634 nucleus

molecular_function

GO:0003677 DNA binding

GO:0043565 sequence-specific DNA binding

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Pfam domain

Protein	Pfam accession	Pfam name	Alignment start	Alignment end	E-value
Glyur000149s00009576.1	PF03790.8	KNOX1	40	71	1.70E-13
Glyur000149s00009576.1	PF03791.8	KNOX2	96	140	4.60E-22
Glyur000149s00009576.1	PF03789.8	ELK	179	200	2.20E-07
Glyur000149s00009576.1	PF05920.6	Homeobox_KN	219	247	0.00015
Glyur000149s00009576.1	PF05920.6	Homeobox_KN	249	275	4.40E-07

Expression pattern

SRA Experiment	Description	TPM
SRR1783599	control	0.447
SRR1783600	control	0.477
SRR1783602	moderate drought stress	0.334
SRR1811619	moderate drought stress	0.191

SRA Experiment	Description	TPM
DRR006519	Root Summer glycyrrhizin high producing strain	0.663
DRR006520	Root Summer glycyrrhizin high producing strain	0.690
DRR006521	Root Winter glycyrrhizin high producing strain	0.871
DRR006522	Root Winter glycyrrhizin high producing strain	0.833
DRR006523	Root Summer glycyrrhizin low producing strain	0.120
DRR006524	Root Summer glycyrrhizin low producing strain	0.117
DRR006525	Leaf Summer glycyrrhizin high producing strain	0.101
DRR006526	Leaf Summer glycyrrhizin high producing strain	0.023

SRA Experiment	Description	TPM
SRR2867873	Salt Stress (root)	8.274
SRR2868004	Drought Stress (root)	6.620
SRR2967015	Control (root)	6.506

SRA Experiment	Description	TPM
SRR9715738	Leaf	0.000
SRR9715740	Leaf	0.328
SRR9715741	Leaf	0.247
SRR9715739	Root	0.124
SRR9715742	Root	0.999
SRR9715743	Root	1.113

SRA Experiment	Description	TPM
SRR8749027	MeJA induced 9h	0.000
SRR8749028	MeJA induced 9h	0.000
SRR8749029	MeJA induced 9h	0.000
SRR8749030	Uninduced	0.000
SRR8749031	Uninduced	0.000
SRR8749032	Uninduced	0.000

SRA Experiment	Description	TPM
SRR8400026	NaCl treatment - Root	5.878
SRR8400027	Control - Root	4.287