Gene detail information of Glyur000149s00009566 |
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| TAIR | AT1G06110.1 | 2.00E-06 | SKP1/ASK-interacting protein 16 |
| NR | XP_004508874.1 | 1.00E-35 | PREDICTED: protein ApaG-like isoform X2 [Cicer arietinum] |
| COG | YP_826759.1 | 2.00E-12 | ApaG protein [Candidatus Solibacter usitatus Ellin6076] |
| trEMBL | tr|I1JX82|I1JX82_SOYBN | 9.00E-36 | Uncharacterized protein {ECO:0000313|EnsemblPlants:GLYMA04G35760.1} |
Sequence
| Transcript Sequence |
|---|
| Protein Sequence |
|---|
Location information (JBrowse)
| Scaffold | Start | End | Strand |
|---|---|---|---|
| Scaffold00149 | 157921 | 161716 | + |
Gene family
| Gene family | subfamily |
|---|---|
| -- | -- |
KEGG pathway
| KO | Enzyme | Enzyme ID | pathway | mapID |
|---|---|---|---|---|
| -- | -- | -- | -- | -- |
Gene Ontology
| Not hits found. |
Pfam domain
| Protein | Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|---|
| Glyur000149s00009566.1 | PF04379.9 | DUF525 | 21 | 61 | 6.20E-12 |
| Glyur000149s00009566.2 | PF02151.14 | UVR | 81 | 105 | 6.30E-06 |
| Glyur000149s00009566.2 | PF04379.9 | DUF525 | 143 | 227 | 4.10E-30 |
| Glyur000149s00009566.3 | PF02151.14 | UVR | 81 | 105 | 3.40E-06 |
| Glyur000149s00009566.3 | PF02151.14 | UVR | 115 | 142 | 1.30E-07 |
Expression pattern
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR1783599 | control | 6.693 |
| SRR1783600 | control | 6.955 |
| SRR1783602 | moderate drought stress | 8.982 |
| SRR1811619 | moderate drought stress | 9.151 |
| SRA Experiment | Description | TPM |
|---|---|---|
| DRR006519 | Root Summer glycyrrhizin high producing strain | 9.773 |
| DRR006520 | Root Summer glycyrrhizin high producing strain | 11.289 |
| DRR006521 | Root Winter glycyrrhizin high producing strain | 15.718 |
| DRR006522 | Root Winter glycyrrhizin high producing strain | 14.141 |
| DRR006523 | Root Summer glycyrrhizin low producing strain | 13.335 |
| DRR006524 | Root Summer glycyrrhizin low producing strain | 12.441 |
| DRR006525 | Leaf Summer glycyrrhizin high producing strain | 11.688 |
| DRR006526 | Leaf Summer glycyrrhizin high producing strain | 11.600 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR2867873 | Salt Stress (root) | 9.759 |
| SRR2868004 | Drought Stress (root) | 9.222 |
| SRR2967015 | Control (root) | 13.517 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR9715738 | Leaf | 7.798 |
| SRR9715740 | Leaf | 9.091 |
| SRR9715741 | Leaf | 8.547 |
| SRR9715739 | Root | 3.043 |
| SRR9715742 | Root | 6.124 |
| SRR9715743 | Root | 5.344 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8749027 | MeJA induced 9h | 4.179 |
| SRR8749028 | MeJA induced 9h | 8.623 |
| SRR8749029 | MeJA induced 9h | 2.713 |
| SRR8749030 | Uninduced | 3.567 |
| SRR8749031 | Uninduced | 1.429 |
| SRR8749032 | Uninduced | 1.450 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8400026 | NaCl treatment - Root | 14.515 |
| SRR8400027 | Control - Root | 15.654 |