Gene detail

Gene detail information of Glyur000149s00009561

Functional Annotation

Database	Orthologs	E value	Annotation
TAIR	AT4G02790.1	3.00E-114	GTP-binding family protein
NR	XP_007162427.1	0	hypothetical protein PHAVU_001G151200g [Phaseolus vulgaris]
COG	YP_007111020.1	3.00E-89	Ras superfamily GTP-binding protein YlqF [Geitlerinema sp. PCC 7407]
Swissprot	tr\|Q9M8Z5\|NSN1_ARATH	2.00E-13	Guanine nucleotide-binding protein-like NSN1 {ECO:0000305}
trEMBL	tr\|V7CZS8\|V7CZS8_PHAVU	0	Uncharacterized protein {ECO:0000313\|EMBL:ESW34421.1}

Sequence

Transcript Sequence

>Glyur000149s00009561.1
ATGGCGATGAGTGTTCAGCTATCAGGCTTGTGGGTGCCCAATTCTCCATCAATTATAGTTGGCGTGAAAGGCCCTAGTTGGAGTGAAAATGGATATGCCAATCCCAACAGCAACAACACATTCGATGGCTGCCAGGGAGAGACTGATCTCTGGGCTGAACTTGACACTGATCTTTATCACTGGACAAAGGCCTTACGCCCTGTGCAGTGGTTTCCTGGTCATATTGCAAAAGCAGAAAAAGAACTGAAGGAACAGCTCAAGTTGATGGATGTTGTCATAGAGATGGATCTATGGCTTGGTAATAGAAAGAGAATTTTGGTTTTAAATAGAGAAGACATGATATCGACTGCAGATCGCAATGCTTGGGCAGCATATTTTACTAGGCATGGAACAAAAGCTGTCTTCTCCAATGGACAGCTTGGAATGGGCACAATGAAGCTAGGTCGGTTAGCAAAGGAATTAGCAGCTGATGTAAATGTTAAACGGAGAGCCAAAGGACTACTTCCTCGTCCGGTTCGAGCTGGAATAGTTGGATACCCTAATGTTGGAAAATCATCTTTGGTTAACCGTTTATTAAAGCGAAGAATGTGCCCAGCAGCTCCAAGGCCAGGAGTCACAAGAGAATTGAAGTGGGTTCGATTTGGGAAAGATCTTGAACTGCTCGATTCTCCTGGAATACTCCCAATGCGAATCAGTGACCAGTCAGCAGCTATAAAACTCGCCATATGTGATGACATTGGAGAGAGGTCCTATGATGTGGCTGATGTTGCTGCGATTCTTGTGCAGATGCTTACAAAACTTCCCACAGTAGGTGGAGATGCTCTTTGTAAACGATACAAGATTGATGTAGATAGTCAATGTGGTAAAACGTTCATAGAGAAGCTTGCGCTCCAAGTGTTCAATGGAAATGTTCATCAAGCCGCATTTCGCGTCCTGTCAGATTTTAGAAAAGGTAGGTTTGGTTGGACTGCATTGGAGAGGCCTCCTAGGTGATGTCAGATGTTTGCTTCTAGTTCTGTGACGCCTGAACTGGAAATTATGCTGGCGACCTNTAGGTGCTGAATGCAGAATCCAACCCCATGTGTGGTGATAAATGAATATGAGATATTATGAATGGAAAGGGAAAGGTCGTGAATTTTCTAAGACAAAAGCGAAATCTGGAGATTTGAGGCACACGAAACAGAGGATTTGAAGTCATGGATGCTTCTTGTTATTACCATGTAATTAATTATTTGGTCTGATGTACAACTAGTGTGCCATGGAAGTTTGTATGCATCATGCTAATGGTATTGTACATCTTTAATTAATTGTTTATAGTGTGATGTTGATTCAAACTTGGGCTGATGCCATGTTAGTAAGACTATCAAATAGAGGAAATTACATATAC

Protein Sequence

Location information (JBrowse)

Scaffold	Start	End	Strand
Scaffold00149	125732	129410	-

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID
--	--	--	--	--

Gene Ontology

molecular_function
GO:0005525 GTP binding

Pfam domain

Protein	Pfam accession	Pfam name	Alignment start	Alignment end	E-value
Glyur000149s00009561.1	PF01926.18	MMR_HSR1	174	262	4.20E-14

Expression pattern

SRP053019

SRA Experiment	Description	TPM
SRR1783599	control	4.029
SRR1783600	control	4.174
SRR1783602	moderate drought stress	3.975
SRR1811619	moderate drought stress	4.033

DRP000996

SRA Experiment	Description	TPM
DRR006519	Root Summer glycyrrhizin high producing strain	8.893
DRR006520	Root Summer glycyrrhizin high producing strain	8.879
DRR006521	Root Winter glycyrrhizin high producing strain	9.429
DRR006522	Root Winter glycyrrhizin high producing strain	9.466
DRR006523	Root Summer glycyrrhizin low producing strain	8.749
DRR006524	Root Summer glycyrrhizin low producing strain	9.275
DRR006525	Leaf Summer glycyrrhizin high producing strain	21.676
DRR006526	Leaf Summer glycyrrhizin high producing strain	22.200

SRP065514

SRA Experiment	Description	TPM
SRR2867873	Salt Stress (root)	8.737
SRR2868004	Drought Stress (root)	9.162
SRR2967015	Control (root)	10.624

SRP215420

SRA Experiment	Description	TPM
SRR9715738	Leaf	16.310
SRR9715740	Leaf	36.155
SRR9715741	Leaf	17.408
SRR9715739	Root	3.045
SRR9715742	Root	6.696
SRR9715743	Root	5.866

SRP188776

SRA Experiment	Description	TPM
SRR8749027	MeJA induced 9h	6.749
SRR8749028	MeJA induced 9h	6.029
SRR8749029	MeJA induced 9h	5.495
SRR8749030	Uninduced	3.065
SRR8749031	Uninduced	0.794
SRR8749032	Uninduced	2.371

SRP175571

SRA Experiment	Description	TPM
SRR8400026	NaCl treatment - Root	10.047
SRR8400027	Control - Root	9.487