Gene detail

Gene detail information of Glyur000149s00009560

Functional Annotation

Database	Orthologs	E value	Annotation
TAIR	AT3G63120.1	7.00E-41	cyclin p1;1
NR	XP_007162425.1	2.68E-122	hypothetical protein PHAVU_001G151100g [Phaseolus vulgaris]
Swissprot	tr\|Q75HV0\|CCP31_ORYSJ	1.00E-61	Cyclin-P3-1
trEMBL	tr\|V7CYQ8\|V7CYQ8_PHAVU	1.00E-122	Uncharacterized protein {ECO:0000313\|EMBL:ESW34420.1}

Sequence

Transcript Sequence

>Glyur000149s00009560.1
CCCTGAGTAGGCAGATTAAAAAAAAATAAAGCACTTTGGTTTGGCACCTACTTTAGCAATGAACAATGGATGGTATTGGCAATGGTATGTGGTAGTGGTGGAGTACATTACAGACTCTTATCTTTTGAGAGAGAGAGAGAGAGGAGGTTGTGACTTGTGGGATTCATTAAAGAGAGAGGGAACCTTTTTATGTGGGAGTAACAGGAGCAGTGTGTAGAAACAACAATATATGATTGATAGACACAACATTATCAACTGTTCATAAAAAGATGGTTGAGAGAGAGACATGATTTCTGTGTGTTCACAGGAGCACTGTTTTCGCGCCTCGCCCTTATGTAGAAAAAGCTGCAACCACCACCACCGCCAGCACCACCACCACCGCCAGCACCACCACCCCACTAGAGTTATCCTGTGATAATTTCTTGGATATGGGGTCTCTGGCGCTTGAAACAGAGGATGTAAGCTCAGACATATACCTTTCACTGGGGCTTAAAGAATTGGATAAAGGAGTAGGAGTTCCACGGGTTCTGTCACTTCTCTCTTCACTTCTTGAGAGATCAGTTCAGAGAAATGAAACGCTGTTGGAAGCAAAGGATATAGAAGATGCTGTTACAGTGTTTCATGGTTTAAGAGCACCTACACTGAGCGTTCGCAAGTACATCGATCGCATCTTCAAGTACTCTGGTTGCAGCCCATCTTGTTTTGTTGTGGCACACATATATGTGGATAGATTTATTCAGCATACCGAGATCAAATTGACCTCACTTAATGTGCACCGGCTTCTGATAACTAGCATTATGCTAGCTGCAAAGTTTATGGATGACGCATTCTTCAACAATGCTTACTATGCGAGAGTTGGAGGGGTTAGTGTAGACACTTTTGGAAGATATTGTTGGCAATTGGAGAAGGAAGCTGCAGAAACACTTCAGATTGAAAGGCCAATGCAGGCTTGTAGAATTAAAGAAAGCTGGTCAAACAAAGATGATCCCACGTGTGCTTCCACAATTGCAAGATGA

Protein Sequence

Location information (JBrowse)

Scaffold	Start	End	Strand
Scaffold00149	121886	124416	+

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID
--	--	--	--	--

Gene Ontology

biological_process
GO:0000079 regulation of cyclin-dependent protein serine/threonine kinase activity

molecular_function
GO:0019901 protein kinase binding

Pfam domain

Protein	Pfam accession	Pfam name	Alignment start	Alignment end	E-value
Glyur000149s00009560.1	PF08613.6	Cyclin	38	149	1.70E-23

Expression pattern

SRP053019

SRA Experiment	Description	TPM
SRR1783599	control	44.880
SRR1783600	control	43.397
SRR1783602	moderate drought stress	28.670
SRR1811619	moderate drought stress	28.565

DRP000996

SRA Experiment	Description	TPM
DRR006519	Root Summer glycyrrhizin high producing strain	38.744
DRR006520	Root Summer glycyrrhizin high producing strain	37.000
DRR006521	Root Winter glycyrrhizin high producing strain	16.601
DRR006522	Root Winter glycyrrhizin high producing strain	16.817
DRR006523	Root Summer glycyrrhizin low producing strain	48.646
DRR006524	Root Summer glycyrrhizin low producing strain	49.264
DRR006525	Leaf Summer glycyrrhizin high producing strain	33.478
DRR006526	Leaf Summer glycyrrhizin high producing strain	33.933

SRP065514

SRA Experiment	Description	TPM
SRR2867873	Salt Stress (root)	71.167
SRR2868004	Drought Stress (root)	57.823
SRR2967015	Control (root)	45.856

SRP215420

SRA Experiment	Description	TPM
SRR9715738	Leaf	22.622
SRR9715740	Leaf	48.051
SRR9715741	Leaf	17.516
SRR9715739	Root	7.854
SRR9715742	Root	15.300
SRR9715743	Root	15.096

SRP188776

SRA Experiment	Description	TPM
SRR8749027	MeJA induced 9h	23.111
SRR8749028	MeJA induced 9h	20.727
SRR8749029	MeJA induced 9h	27.547
SRR8749030	Uninduced	4.892
SRR8749031	Uninduced	0.824
SRR8749032	Uninduced	3.417

SRP175571

SRA Experiment	Description	TPM
SRR8400026	NaCl treatment - Root	64.773
SRR8400027	Control - Root	63.450