Gene detail

Gene detail information of Glyur000149s00009553

Functional Annotation

Database	Orthologs	E value	Annotation
TAIR	AT2G30620.1	1.00E-20	winged-helix DNA-binding transcription factor family protein
NR	XP_007145176.1	3.99E-59	hypothetical protein PHAVU_007G216900g [Phaseolus vulgaris]
Swissprot	tr\|P23444\|H1_MAIZE	8.00E-26	Histone H1
trEMBL	tr\|V7BJG7\|V7BJG7_PHAVU	1.00E-59	Uncharacterized protein {ECO:0000313\|EMBL:ESW17170.1}

Sequence

Transcript Sequence

>Glyur000149s00009553.1
TTTAATTTTTATTGTGGCCCAACCCAACAACACCTAGAACGGTAAGCCGCCAAAATGTGATTGAAAATTGAAATTCGAACTCAGTTTGGTGCTAAACTAAATTAATCCTAAAATGTAAATCTGAAAAAAAAAGTCATGTACTAGTAATTTGTGGCACTGGCACTGGCACTAGCAGTTAGCTTCCCAACCCCCGGCCAGGCAGGGTCAAAAAACGTAGTAACAGCATCCCATACACTTACTAGTACCTACAAATGCCCGTTGCCTTGCCACTTTACTTACTCATCTCTATCCTATCCTTTTTATGTGATGCACTAGACTTNCTAGATATTTTGGCCTCTCCTCCTGCAAAACCCGAAAAAGTCTCATTTATTTTCCATTCGTCAATCTACAAGTCAATAATGGGTAAAGCAGCAAATNCTACCAAGAAGAAATCCCCTTCCACCGTTCACCACCCTCCTTATTTGGAGATGATAGGGGATGCGATATCGACGTTGAAAGAGCGCACGGGTTCAAGCCAACAAGCAATAGCAAAGTTCATAGAGGACAAACACCAGAAACTGCTCCCTCCAAACTTCAGGAAACTGCTCTCCCTCCAGTTGAAAAATTTGGTCAAATCCAACAGCCTCTACAAGGTCAAAAACTCCTACAAGCTTTCCTCCACCGTCGACCAAGGAACCGCCACCACCAACAAGGGCGGTGGGAAGAAGAAGAAGATCGCAGAGAAGACCAAGAGGCTGAGTCAGGTGAAGACCCCTGAAGCTCTCAAGAACAAGCAAACCACAACCACCAACAACAACAAGAAGAAAGATGAAACGAAGAAGAAATCTGTGGTGGTGGCGGCGGCGGCATCCTCGGGAGGGAAAGTGAAGCGTCTGAGTCAGGTGAAGACCCCTGAAGCAATGAAGAAGAAGAAACCAAATTTGAGCCCTATGAAGCGCAAGACTAATACTCCCAATCCCAAACCCATCGCTTCTTCCAGGCCCACCAGAAAGGCCAGGAAATGAAAGCACTTCACTTCTGGTGCCTAATATTATGACTAATCAAAATAGTATTTGTGTCATGTATGTTTTAGATTTTATTTTATTTCTTAGATTTGCTTCCCTGCAGTGGATTATTGTTACTATAGTGTTGTGATCAACTTATGGCTGACGATGGTAGTAATTAAGTACTGAATTAATGTGCTACCTTTCTATATATTTTTTTTGGGTGAGTACTACCTTTCTATATATGCTTACTNTGTTATTCTAGTTTATTTCCAGCCTATTTACATCGTCATTTTCCATGTTTGCATTTGTTTTAACTTTAACACCCAAAAGAGTCTCTGAAATTGGCCGCAACAATTAGGGGCAAGCACGGGCAAG

Protein Sequence

Location information (JBrowse)

Scaffold	Start	End	Strand
Scaffold00149	63224	64696	+

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID
--	--	--	--	--

Gene Ontology

biological_process
GO:0006334 nucleosome assembly

cellular_component

GO:0000786 nucleosome

GO:0005634 nucleus

molecular_function
GO:0003677 DNA binding

Pfam domain

Protein	Pfam accession	Pfam name	Alignment start	Alignment end	E-value
Glyur000149s00009553.1	PF00538.14	Linker_histone	67	135	4.30E-22

Expression pattern

SRP053019

SRA Experiment	Description	TPM
SRR1783599	control	27.174
SRR1783600	control	27.273
SRR1783602	moderate drought stress	49.514
SRR1811619	moderate drought stress	49.014

DRP000996

SRA Experiment	Description	TPM
DRR006519	Root Summer glycyrrhizin high producing strain	25.251
DRR006520	Root Summer glycyrrhizin high producing strain	24.972
DRR006521	Root Winter glycyrrhizin high producing strain	70.581
DRR006522	Root Winter glycyrrhizin high producing strain	67.716
DRR006523	Root Summer glycyrrhizin low producing strain	30.177
DRR006524	Root Summer glycyrrhizin low producing strain	31.268
DRR006525	Leaf Summer glycyrrhizin high producing strain	87.263
DRR006526	Leaf Summer glycyrrhizin high producing strain	87.296

SRP065514

SRA Experiment	Description	TPM
SRR2867873	Salt Stress (root)	3.251
SRR2868004	Drought Stress (root)	3.240
SRR2967015	Control (root)	12.123

SRP215420

SRA Experiment	Description	TPM
SRR9715738	Leaf	33.674
SRR9715740	Leaf	41.510
SRR9715741	Leaf	49.262
SRR9715739	Root	8.368
SRR9715742	Root	15.731
SRR9715743	Root	11.687

SRP188776

SRA Experiment	Description	TPM
SRR8749027	MeJA induced 9h	1.992
SRR8749028	MeJA induced 9h	0.366
SRR8749029	MeJA induced 9h	1.004
SRR8749030	Uninduced	1.203
SRR8749031	Uninduced	0.311
SRR8749032	Uninduced	0.624

SRP175571

SRA Experiment	Description	TPM
SRR8400026	NaCl treatment - Root	9.753
SRR8400027	Control - Root	8.756