Gene detail

Gene detail information of Glyur000148s00009079

Functional Annotation

Database	Orthologs	Annotation
TAIR	AT1G55020.1	lipoxygenase 1
NR	XP_003521704.2	PREDICTED: probable linoleate 9S-lipoxygenase 5-like [Glycine max]
Swissprot	tr\|Q43191\|LOX15_SOLTU	Probable linoleate 9S-lipoxygenase 5
trEMBL	tr\|I1JRC2\|I1JRC2_SOYBN	Lipoxygenase {ECO:0000256\|RuleBase:RU003975}

Sequence

Transcript Sequence

>Glyur000148s00009079.1
ATGTCTCAGAACATAGTACTGAATGCCCTCACCACCAGCCATGACAACAATAACAAGATCAGAGGGACAGTGGTGTTGATGAAGAGAAATAAGCTGGACTTCAACGATTTGGGTGCTTCCGTTGTTGACAGTATTGATGAGTTTCTGGCAAACGGAATCACGCAGTCAGACGATCATCGAACAACCCAGATCATCTCACTGTGTGACTGCGTGATTCTACTCACCGTAGCATATCCGAATTCGTTAGGAAAAGTTGGAAAGCCTGCATATCTGGAAGACTGGATTACCACAAACACATTGGTAGCGACCGAATCGGTATTCAGGGTTACATTTGAATGGGATGATGAGATAGGAACACCAGGAGCATTTTTAATAAGGAACAATCATGACAATGAGTTCTACCTAAGAAGCTTGACACTTGAAAATGTTCCAAGCCAAGGTGTTATCCACTTTATTTGCAACTCTTGGGTATACCCTGCCCACAAATATGAAAGGGATCGCATTTTCTTCAATAACAAGACATACCTTCCAAGTGAAACACCAGTGCCGCTTCTTAGGTACAGAGAAGAAGAACTAGAGAGTTTAAGAGGAGCTGGAAGAGGGAATGTGCAATTGCAAGAATGGGACAGGGTCTATGACTATGCATACTACAATGATTTGGGGGATCCCGATAAGGGTCCAGAATATGCCCATGCTAATAGTGAGAGTAGATTGAATATTTTCAAGAGCTTAGACATCTATGTTCCAAGGGATGAAAGATTTGGTCACTTGAAAATGGCAGACTTTTTTGCTTATGCACTGAAATCCATAGTCCAAGTTATCATACCCGAGCTGGAAATCGATAGCACCCCTGATGAGTTTGATAGCTTTGAAGATGTGCTTAAACTCTATGAAGGTGGGATTGAGTTGCCTGAGAGTGTACTTAAGGCNATTAGAGATAGCATCCCTGCAGAGATGCTCAAAGAAATTCTCCGAACTGATGGGGAAAGGTTCCTCAAATTTCCGGTGCCTCAAGAATTCCCACCAGCATCTAAGCTAGATCCTAAAGTCTACGGTGATCAATCTAGCACAATAAGAAAAGAACACATTGAGAGCATTCTGNATGGGCTCACTGTCGATGAGGCAATTTTCAAATTTATATTCAAAGCAATTGCACAAAGGAAGTTGTTCATATTAGACCACCATGATACACTAATGCCATACTTAAGGAGGGTAAACTCCACTTCTACAAAGACTTATGCTAGTAGGACAATTCTTTACTTGCAAAATGATGGGACTTTAAAGCCATTGGCCATNGAATTGAGTTTGCCACATCCCAAAGGAGATCAACACGGTGTCATTAGTAAAGTTTATATGCCTGCAAAAAATGGCGTTGAAAATTCCATCTGGCAGTTGGCTAAAGCTTATGTGGCGGTAAATGACTCGGGCTATCATCAGCTTATCAGCCATTGGTTGCATACTCATGCGGTGATTGAGCCATTCGTTATAGCTGTGAACAGGCGACTTAGCGTGCTTCACCCCATTCACAAACTATTGCATCCTCACTTTCGTGACACCATGAATATAAATGCATTAGCACGACAAATCCTCATCAATGCAGGAGGCATTTTAGAGACAACGGTTTTTCCATCCAAGTATTCCATGGAGATGTCATCTGTGCTTTATAAGAATTGGGATTACCCTTATGCAGTTGACGGTGTAGAGATATGGTTTGCCATCAAGACATGGGTTTGTGATTATTGTTCCTTTTACTACAAAACGGATGACACAGTGAAGCAAGACATAGAACTGCAATCTTGGTGGAAGGAATTGAGAGAGGAAGGTCACGGTGACAAGAAAGACGAGCCTTGGTGGCCAAAGATGCAAACGCGCGAAGAGTTGATTGAGACTTGCACCANCATTATATGGATTGCTTCGGCTCTGCATGCGGCCACCAACTTTGGACAATACCCTTATGCGGGTTACCTCCCAAACCGTCCAACAATAAGTCGGCGATTCATGCCCGAGAAAGGAACTCCAGAATATGATGAACTCGTGGCAAATCCTGATAGAGCTTTTCTGAAGACAATCACGGCACAATTTCAGACTCTAGTTGGGATTTCACTCATAGAAATATTGTCTAGGCACTCTTCTGATGAGGTGTACCTTGGACAGAGGGACACTCCTCACTGGACATCTGATTGGGAGCCTTTGGATGCCTTTGACAAGTTTGGAAAGAAATTGGCAGAGATTGAGGAAAGAATCATGGCAATGAATGATGATGTCATGCTGAAAAACCGAGTTGGGCCGGTTAAGATGCCATACACCTTGCTCTATCCTACAAGTGAGGGTGGACTAACTGGCAAGGGCATTCCCAACAGTGTCGCCATTTGA

Protein Sequence

Location information (JBrowse)

Scaffold	Start	End	Strand
Scaffold00148	301806	307588	-

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID
K15718	LOX1_5	EC:1.13.11.58	Linoleic acid metabolism	map00591
			Linoleic acid metabolism	map00591

Gene Ontology

biological_process
GO:0055114 oxidation-reduction process

molecular_function

GO:0005515 protein binding

GO:0016491 oxidoreductase activity

GO:0016702 oxidoreductase activity, acting on single donors with incorporation of molecular oxygen, incorporation of two atoms of oxygen

GO:0046872 metal ion binding

Pfam domain

Protein	Pfam accession	Pfam name	Alignment start	Alignment end	E-value
Glyur000148s00009079.1	PF01477.18	PLAT	81	170	3.80E-19
Glyur000148s00009079.1	PF00305.14	Lipoxygenase	183	338	7.70E-38
Glyur000148s00009079.1	PF00305.14	Lipoxygenase	338	560	9.60E-98
Glyur000148s00009079.1	PF00305.14	Lipoxygenase	559	774	8.50E-104
Glyur000148s00009079.2	PF01477.18	PLAT	67	155	2.80E-19
Glyur000148s00009079.2	PF00305.14	Lipoxygenase	168	323	7.50E-38
Glyur000148s00009079.2	PF00305.14	Lipoxygenase	323	545	9.20E-98
Glyur000148s00009079.2	PF00305.14	Lipoxygenase	544	759	8.20E-104

Expression pattern

SRP053019

SRA Experiment	Description	TPM
SRR1783599	control	0.116
SRR1783600	control	0.052
SRR1783602	moderate drought stress	0.059
SRR1811619	moderate drought stress	0.031

DRP000996

SRA Experiment	Description	TPM
DRR006519	Root Summer glycyrrhizin high producing strain	0.017
DRR006520	Root Summer glycyrrhizin high producing strain	0.044
DRR006521	Root Winter glycyrrhizin high producing strain	0.000
DRR006522	Root Winter glycyrrhizin high producing strain	0.000
DRR006523	Root Summer glycyrrhizin low producing strain	0.045
DRR006524	Root Summer glycyrrhizin low producing strain	0.089
DRR006525	Leaf Summer glycyrrhizin high producing strain	8.674
DRR006526	Leaf Summer glycyrrhizin high producing strain	8.252

SRP065514

SRA Experiment	Description	TPM
SRR2867873	Salt Stress (root)	2.341
SRR2868004	Drought Stress (root)	3.401
SRR2967015	Control (root)	0.860

SRP215420

SRA Experiment	Description	TPM
SRR9715738	Leaf	5.914
SRR9715740	Leaf	7.637
SRR9715741	Leaf	5.955
SRR9715739	Root	0.000
SRR9715742	Root	0.358
SRR9715743	Root	0.223

SRP188776

SRA Experiment	Description	TPM
SRR8749027	MeJA induced 9h	0.021
SRR8749028	MeJA induced 9h	0.085
SRR8749029	MeJA induced 9h	0.042
SRR8749030	Uninduced	2.296
SRR8749031	Uninduced	6.140
SRR8749032	Uninduced	0.651

SRP175571

SRA Experiment	Description	TPM
SRR8400026	NaCl treatment - Root	0.579
SRR8400027	Control - Root	0.624