Gene detail

Gene detail information of Glyur000148s00009076.1

Functional Annotation

Database	Orthologs	E value	Annotation
TAIR	AT1G67500.1	0	recovery protein 3
NR	XP_006577239.1	0	PREDICTED: DNA polymerase zeta catalytic subunit-like isoform X1 [Glycine max]
COG	YP_007312033.1	2.00E-51	DNA polymerase elongation subunit (family B) [Methanomethylovorans hollandica DSM 15978]
Swissprot	tr\|Q766Z3\|REV3_ARATH	0	DNA polymerase zeta catalytic subunit
trEMBL	tr\|I1JRC1\|I1JRC1_SOYBN	0	DNA polymerase {ECO:0000256\|RuleBase:RU000442}

Sequence

Transcript Sequence

>Glyur000148s00009076.1
CCTTGGTCCAATGGTACACAGGTGAACCGTGAGATGTGCCACTTCACCCTAGACGCCACCTATTAGTAGCGCCAAAATTTCCTGCGTTTTCAATTTCCTTTATTTACTCGTCACTCCGTGAATGCCCGTTCGTTTGTTATTATTAGAAAGCAAAAGCGGGGGAAAAAGAAAGCAAAACATGTCAGATTCACAGTCGAATTCAGAGATTTTCAGTGTTCGGATTGTCTCCATAGACTATTACATGGCACAACCTATCCCAGGCGCGGATATCTGTCACAGCAGCTTCCATGGTGGAAAAGTGAACGAGGTTCCTGTGATAAGAGTGTACGGTTCTACTCCTGCTGGCCAGAAGACTTGCTTGCACATACATGGAGCTTTACCTTATATGTATGTGCCGTGTTCAGATATACCGCTTCAACCAGACCGAGAAGGTGATGCATACACCTATAAGGTGGCTTCTTCTCTTGAGAAAGCCTTGAAGCTTAAAGGCAGTGCTGGTGCAACGAGACAACATGTACATGGCTGCAGCCTTGTACGAGCAAGAAAATTTTATGGCTATCACTCATTTGAAGAGTTGTTCGTGAAGATATACCTATATTATCCTCAAGATGTCTCCCGTGCAGCTAATCTTCTCTTGGCTGGTGCCGTTCTTGATAAAAGCTTACAGCCTCATGAATCACATATTCCCTTTATTCTTCAGTTTCTGATCGATTACAACTTGTATGGCATGGGTCATTTGCACCTATCAAAGATGAGGTTCCGCCATCCCATGCCAGATTCTGTTCACAAGAAATTAGATATTGATATGCAACATAGAAAGGCAGATCCGGTTGCTGATGCATGCTTAGAATCAAAACTGTGGATGTCTTCTACGATCCCATCTGATTGGATGTGGTCACCCCCTACCGAATTTGGTGTTTTGTCAAATGATAAGGCTCACTGTCCTAAGCGTCAAAGCATCTGTGAGATTGAAGGAGATACTTCTGTAGATGAGATTATTAATCAGCAGTTAAAAATGTATTCATCTCTCTCACAAACATGCTCAGATATCAACATGGTTCAGTCACTTGTACCAATATGGGAGGAACAGAGGAAACGGACTGGGATTCATGAGGCTACTATACCTTCTGATCCTGGCAAACCAATACCAGATGATGTCATGAAACTTCTCTCTGCTGGTCTTGACTTTGAGAAAAAACTTATTGAATTGTGCAGTGAAGCTGAAACCTCTTTATTTTGCACTCCTTCTGAGAAGGAATTCAGAGAAACAGACATAATAGGCTCAGCAACACCACCAGCTTCATTGTGTGAAAATGCCAAATTGCTTGAGGAAGGGACTGACACAATTCTCAAGTTGTTGACTATTGATGAGATGCAATCATCTGAAAGGATTGGAATGTTGGACATAAAGGCAGCTGCTGATAAGGAGGCACAAAATCTTCTTAAGTGGCTTGCAACTTCTCAAGCTGCAGAGGATATAAACTCTGATGATGAACTTGTTTGTGAGACAATCTNGAGTCCCTTATTACCTGCTGCAACAATTGATAAGATGCTAGAGAAAGCGAATATGGCTTATGAGAGTGAGTCCCAGAAGGAGTGTCAGGATATTTTAGATTCAATTGATGATATGCTCAAGTTGGAGCTACCGAAGGAAAATCCTTCTAGTTCCTTTGATCACAACCGTCCTGTTGAGGCTTCATCAAACAGTATGATGATACCCCAAGTTGATGGTTCTAATGATGATAAATTCTCAAGCCCATTTGCTAGTTTGGCTGGAAACTCTTCTGTAGCAGAGATAAACAGTGAATACAAAAGGGCTTCTGAGTACCTTGTGCTGGACAATGCTGACACAGGTATTGTTAGCACAGATAAAAGGAATAAACAATGGGGGTCTTTGCCTTTTTCCATGACCAGCAAGGTTAATAATGANGGAGAGCATGCTGCTTTACATGTGACTCATCTGTTTGAAAGCGAAATCGGAGATTCTTCTCACTCCNATTACTCAACCAAAAATGAGGTTAGAAATAATGCTTGTATTATAAGAAATATGGGTGAAAGTGCTTCAGATTCAAAAGAAGTACATGGATTGGTTAGCTGCTCATTGCGGGACTTGATGAGGCGAAAGCGATCCTATCGAGTTGAACATGCTGAACGTGAATCTAGAACTACAAAGAAGCTTCTTTTAGACAGGCATGAGGGACCAAATACATGCCTTTGGCAAAAACAACTGGATTTGAAAACAATGCAAACCGATGAAGAAGAAATAGAACTACAGAAAAATTGTGATAATAAAACTAACAATCATGATAATTTAGCGTGTGGGAAACCTTTGCTTCCTGCTGGCAGTGATAGTTTTTTACAGGTGAGTATGCCAAAAGATGAATATTTTGGTCAACATGAAATGGAGTGTCTAGAAGCAAGTACGGTTTTGAGTTACTCCACAAATGCAGGCTCTTCTTCAATGCATGGAGGACCAAGCCCACATAAGCTTGAAACTTCATGTTTTATTGATTCCATAGACCAATCTGTGGCTTGCAGGGATAAAAACCTTGAGGTCAGAACAGCTTATGCAAAAACTGTAGCTTCTGATACCTATACCCCAAATCCCTTTTTAGACACTCTGTTGAGAACTGATGCTGATCGTAAAGTCCCTGAGAAGTGTCAGCAAACTGATTCTGCTGCTTCAAGTAGTGGACAGAGCTCATCAATTGATGATAAAGTGTCAGGCAAACATAAATGCATGGATAAAAGTTCTTGTGGAAGCATATGTCTTATGCAACATGNTCATATAAAGTCTTATGAGCATGCTGTGGGAAAAAGCGTGGCAAGTGACACACAAGTATTGCAGAGTGAAAAGGTTGAGAATCAAAAGCTGGGTAAAAATTTCTTGTGTGAGACTATTGGCTCAGGACCCATTGCTGATGACTTGAAGGATAATCACATGAAATTAACTGAAATAACCATAGACAAGAACCCTTCGTCTGACAAGAACCTGGAAAGTAATTTGTCCTTGCCAANCTTCTCTGATACCCATTTACATCTGTATGAGGAGGATGAAATGCCAGGGAATGCTCTGGATGTTTTTCTTCCTATTTCTGCAAAGGACTCCCAAAAGGAGAGGGAAACTTGGAACAAGTGTGTTACAATTAAAACCCACAGATCCAATGGGACAAAGGGTGTTGCCACTTACTATCAAAATGATGGCTCTCACCTATACCTATTAACACCAAATATTTTGCCTCCTTCCGTGGATTCTGTGCAGAGATGGCTATTTTGTGANGAGAGAGAACCTGATGCAGAGGAAAAGGACATACCTAAATGCACTTCTGGACNTCCTCTTAGGCATACTCATGATCAAATGCACCAAGAACATGATGCAGAGGACAAGGATGTATCTAAATGTGCTTCCGAACCTCCTCTTAGGCCTGAGCTGTATCAAGATGTTGGCACAGAAAAGAAGCCTCCATGCATTAGCAAAGGACAAACAGAAAGAGTAAAAGCATGCGTAGATGGCTCACAAGATATATCTCAGATATCAGGCCCTGATGGGAAATCAAGTTTTACCCCTCTAAGTCAAATTGGATTTCGAGACCCTGCAAGTGTTGGCCGTGGACAGCAATTGACATTACTTAGTATAGAGGTTGTTGCAGAATCTAGAGGAGACCTTTTACCTGATCCTCAATTTGATGGCATCAACATTGTAGCTCTTGGTTTTCAGAATGATAGTGATTCTATTATTGAAGTTCTTGTTCTTTTGCATAGTAAATTNGTACCTTGTCAGAGAAGTTTCGATGGTCTATCAGGCTGCAACGTATTGGTCTTCACTGATGAGAAGCACTTGATTAAAGAATTTATAAAGATTGTGTCTTCATCTGACCCAGATATATTGATGGGCTGGGATATTCAAGGGAGTTCTCTTGGTTTTCTAGCAGAAAGGGCTTCACATCTTGGTTTAGGATTACTTAATGGGTTGTCTCGCACTCCATCTGATTCTTGGATTGCTTCAGAAGAGACCAAAACTTCTGAAAAAGGTATCTTGGAACTGGACGTCCTTGATGCCTCTAGTCTAGATTGTTGTGCACAAGAAAGTTCAATAATTGAGGATGAATGGGGACGAACACATGCTAGTGGACTTCATGTAGGTGGCAGAATTGTCCTTAATGTATGGAGATTGATTCGTGGAGAAGTTAAGCTGAATTTGTATTCAGTTGAAGCTGTAGCTGAAGCTGTATTGAGGCGGAAAATTCCTTTTATACACCACAAGGTGCTGACAAAATGGTTTTCAAGTGGTCCTGGACAAGCAAGATATCAATGTATAAAATATGTTGTGGAGAGAGCAAAGCTGAACCTTGAGATATTAAACCAACTTGATATGGTGAATCGAACATCAGAACTCGCTCGTGTTTTTGGCATAGAATTTTTTTCTGTTCTCTCTCGAGGCTCACAATACCGTGTTGAGTCCATGTTTTTGAGGTTGGCCCATACACAAAACTATCTTGCTATCTCACCCGGAAATCAACAGGTTGCTTCTCAACCTGCCATGGAATGTCTGCCACTAGTAATGGAACCAGAGTCAGGATTTTATTCAGATCCTGTTGTTGTACTGGACTTCCAGTCTTTATATCCATCGATGATAATTGCATACAACCTTTGCTTTTGTACATGTCTTGGCAAAGTTGTCACATCAAAGGCTAACACACTTGGGGTTAGTTCATTTTCACCAGAGCAGCATGTGCTGCAGGATTTAAAAGATCGAATCTTGATCACTCCAAATGGTGTTATGTTTGTACCTTCCAAGGTTCGAAGAGGGGTACTGCCCCGTTTATTGGAAGAAATCTTATCAACTAGAATAATGATATTAAATGCAAGACAGCTTGCTTTGAAGCTCATTTCAAATGTAACATATGGTTACACTGCTGCTGGATTTAGTGGTCGCATGCCTTGTGCAGAACTTGCAGACAGTATCGTTCAATGTGGCCGAAGTACACTGGAAAAGGCTATATCATTTATAAATCTACATGAAAAGTGGAATGCTAAAGTTATTTATGGAGATACTGATAGTATGTTTGTCCTCCTTAAAGGACGCACTATTAAAGAGTCCTTCCAAATTGGGAGTGAGATTGCTGCTGCTATCACTGCTATGAATCCTAGTCCTGTCACCCTGAAGATGGAGAAAGTTTATCATCCGTGTTTCCTGATTACTAAAAAACGATATGTTGGCTACAGTTATGAAAGCCCTGATCAAATCAAACCTGTTTTTGATGCTAAAGGTATTGAAACAGTACGCAGGGACACGTGTGGTGCAGTTGCAAAGATAATGGAGCAGTCTTTGAGACTCTTTTTTGAGCATCAGGATTTATTGGAGGTGAAGATTTATTTGCAACGTCAGTGGAAGAGGATTCTTTCAGGCAGATTCTCCCTTAAAGATTTTATCTTTGCAAAGGAGGTTCGCTTGGGTACCTACAGTGCAAGGATCTCATCACTTCCTCCTGCTGCAATTGTGGCCACTAAGGCAATGAGGGTTGATCCTAGGGCAGAACCACGTTATGCTGAGAGAATACCTTATGTTGTAATCCATGGAGAGCCTGGAGCCCGCCTGGCTGACATGGTTGTGGATCCATTGNAAGTTTTGGCAATTGATTCCCCGTTTAGAATAAATGATTTATATTACATTAACAAACAAATAATACCGGCTCTACAGCGGGTATTTGGACTTGTTGGTGCTGACCTGAACCAGTGGTTTGCAGAGATGCCCCGCCCTGNAAGGGAAGCTTCTGCAAAGCATACATTCGCTCCAAATTTCCACCGGACCAGAATTGATTATTACTATCTCTCAAAACATTGTGTACTGTGTGGTGGGTTGGTCCAGGCATCAGCCCGTTTATGTAATCAATGTTCTGAAAATGAAGTAGCTGCTGCAACAGCCGTGATTAGTAAGACTTCGAAGTTAGAGCAAGAGATGCAACATCTTGTTGCTATATGTCATCACTGTGGAGGTGGGGATAGGCTTCTCGAAAGTGGTGTGAAGTGCACGTCCATTTCGTGCTTGGTGTTCTATGAGAGGCGAAAAGTACAGAAAGAACTACTAGCTGCCGCCCATGTTGCTGCAGGTAGAGGCTTCTATCCAAGATGCACGGTGGAATGGTTCTGATAGCCCAGTAAAACATTTTCTACACGAAGTGGTAAAAATATCTTCGTTTGGCATTAAGCCAAGTCAAATCTGTATATTTGGTTCTGTAGCGGGATTCGCACAACGCGCGGTGGAAGAAAGAATTTATTTAATCTAAGTTGGATTAGAAAGTGGCATGTTAAGTGTTGTAAATGTAAGA

Protein Sequence

>Glyur000148s00009076.1
MPVRLLLLESKSGGKRKQNMSDSQSNSEIFSVRIVSIDYYMAQPIPGADICHSSFHGGKVNEVPVIRVYGSTPAGQKTCLHIHGALPYMYVPCSDIPLQPDREGDAYTYKVASSLEKALKLKGSAGATRQHVHGCSLVRARKFYGYHSFEELFVKIYLYYPQDVSRAANLLLAGAVLDKSLQPHESHIPFILQFLIDYNLYGMGHLHLSKMRFRHPMPDSVHKKLDIDMQHRKADPVADACLESKLWMSSTIPSDWMWSPPTEFGVLSNDKAHCPKRQSICEIEGDTSVDEIINQQLKMYSSLSQTCSDINMVQSLVPIWEEQRKRTGIHEATIPSDPGKPIPDDVMKLLSAGLDFEKKLIELCSEAETSLFCTPSEKEFRETDIIGSATPPASLCENAKLLEEGTDTILKLLTIDEMQSSERIGMLDIKAAADKEAQNLLKWLATSQAAEDINSDDELVCETIXSPLLPAATIDKMLEKANMAYESESQKECQDILDSIDDMLKLELPKENPSSSFDHNRPVEASSNSMMIPQVDGSNDDKFSSPFASLAGNSSVAEINSEYKRASEYLVLDNADTGIVSTDKRNKQWGSLPFSMTSKVNNXGEHAALHVTHLFESEIGDSSHSXYSTKNEVRNNACIIRNMGESASDSKEVHGLVSCSLRDLMRRKRSYRVEHAERESRTTKKLLLDRHEGPNTCLWQKQLDLKTMQTDEEEIELQKNCDNKTNNHDNLACGKPLLPAGSDSFLQVSMPKDEYFGQHEMECLEASTVLSYSTNAGSSSMHGGPSPHKLETSCFIDSIDQSVACRDKNLEVRTAYAKTVASDTYTPNPFLDTLLRTDADRKVPEKCQQTDSAASSSGQSSSIDDKVSGKHKCMDKSSCGSICLMQHXHIKSYEHAVGKSVASDTQVLQSEKVENQKLGKNFLCETIGSGPIADDLKDNHMKLTEITIDKNPSSDKNLESNLSLPXFSDTHLHLYEEDEMPGNALDVFLPISAKDSQKERETWNKCVTIKTHRSNGTKGVATYYQNDGSHLYLLTPNILPPSVDSVQRWLFCXEREPDAEEKDIPKCTSGXPLRHTHDQMHQEHDAEDKDVSKCASEPPLRPELYQDVGTEKKPPCISKGQTERVKACVDGSQDISQISGPDGKSSFTPLSQIGFRDPASVGRGQQLTLLSIEVVAESRGDLLPDPQFDGINIVALGFQNDSDSIIEVLVLLHSKXVPCQRSFDGLSGCNVLVFTDEKHLIKEFIKIVSSSDPDILMGWDIQGSSLGFLAERASHLGLGLLNGLSRTPSDSWIASEETKTSEKGILELDVLDASSLDCCAQESSIIEDEWGRTHASGLHVGGRIVLNVWRLIRGEVKLNLYSVEAVAEAVLRRKIPFIHHKVLTKWFSSGPGQARYQCIKYVVERAKLNLEILNQLDMVNRTSELARVFGIEFFSVLSRGSQYRVESMFLRLAHTQNYLAISPGNQQVASQPAMECLPLVMEPESGFYSDPVVVLDFQSLYPSMIIAYNLCFCTCLGKVVTSKANTLGVSSFSPEQHVLQDLKDRILITPNGVMFVPSKVRRGVLPRLLEEILSTRIMILNARQLALKLISNVTYGYTAAGFSGRMPCAELADSIVQCGRSTLEKAISFINLHEKWNAKVIYGDTDSMFVLLKGRTIKESFQIGSEIAAAITAMNPSPVTLKMEKVYHPCFLITKKRYVGYSYESPDQIKPVFDAKGIETVRRDTCGAVAKIMEQSLRLFFEHQDLLEVKIYLQRQWKRILSGRFSLKDFIFAKEVRLGTYSARISSLPPAAIVATKAMRVDPRAEPRYAERIPYVVIHGEPGARLADMVVDPLXVLAIDSPFRINDLYYINKQIIPALQRVFGLVGADLNQWFAEMPRPXREASAKHTFAPNFHRTRIDYYYLSKHCVLCGGLVQASARLCNQCSENEVAAATAVISKTSKLEQEMQHLVAICHHCGGGDRLLESGVKCTSISCLVFYERRKVQKELLAAAHVAAGRGFYPRCTVEWF

Location information (JBrowse)

Scaffold	Start	End	Strand
Scaffold00148	283647	299136	-

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID
K02350	POLZ1, rev3	EC:2.7.7.7	Fanconi anemia pathway	map03460
			Platinum drug resistance	map01524

Gene Ontology

biological_process

GO:0006281 DNA repair

GO:0019985 translesion synthesis

cellular_component
GO:0016035 zeta DNA polymerase complex

molecular_function

GO:0000166 nucleotide binding

GO:0003676 nucleic acid binding

GO:0003677 DNA binding

GO:0003887 DNA-directed DNA polymerase activity

GO:0008408 3'-5' exonuclease activity

Pfam domain

Protein	Pfam accession	Pfam name	Alignment start	Alignment end	E-value
Glyur000148s00009076.1	PF03104.14	DNA_pol_B_exo1	74	213	9.60E-06
Glyur000148s00009076.1	PF03104.14	DNA_pol_B_exo1	1171	1311	4.70E-09
Glyur000148s00009076.1	PF00136.16	DNA_pol_B	1440	1865	1.50E-82
Glyur000148s00009076.1	PF14260.1	zf-C4pol	1908	1981	2.90E-11

Expression pattern

SRP053019

SRA Experiment	Description	TPM
SRR1783599	control	5.414
SRR1783600	control	5.414
SRR1783602	moderate drought stress	7.795
SRR1811619	moderate drought stress	7.781

DRP000996

SRA Experiment	Description	TPM
DRR006519	Root Summer glycyrrhizin high producing strain	5.042
DRR006520	Root Summer glycyrrhizin high producing strain	5.056
DRR006521	Root Winter glycyrrhizin high producing strain	3.005
DRR006522	Root Winter glycyrrhizin high producing strain	3.024
DRR006523	Root Summer glycyrrhizin low producing strain	5.024
DRR006524	Root Summer glycyrrhizin low producing strain	4.985
DRR006525	Leaf Summer glycyrrhizin high producing strain	4.449
DRR006526	Leaf Summer glycyrrhizin high producing strain	4.308

SRP065514

SRA Experiment	Description	TPM
SRR2867873	Salt Stress (root)	9.156
SRR2868004	Drought Stress (root)	10.839
SRR2967015	Control (root)	10.979

SRP215420

SRA Experiment	Description	TPM
SRR9715738	Leaf	4.874
SRR9715740	Leaf	5.955
SRR9715741	Leaf	5.479
SRR9715739	Root	0.851
SRR9715742	Root	5.671
SRR9715743	Root	4.872

SRP188776

SRA Experiment	Description	TPM
SRR8749027	MeJA induced 9h	5.061
SRR8749028	MeJA induced 9h	7.393
SRR8749029	MeJA induced 9h	3.253
SRR8749030	Uninduced	4.021
SRR8749031	Uninduced	2.518
SRR8749032	Uninduced	2.511

SRP175571

SRA Experiment	Description	TPM
SRR8400026	NaCl treatment - Root	12.043
SRR8400027	Control - Root	10.932