Gene detail information of Glyur000148s00009066.1 |
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| TAIR | AT1G09020.1 | 0 | homolog of yeast sucrose nonfermenting 4 |
| NR | XP_004494610.1 | 0 | PREDICTED: sucrose nonfermenting 4-like protein-like isoform X2 [Cicer arietinum] |
| Swissprot | tr|Q944A6|SNF4_ARATH | 0 | Sucrose nonfermenting 4-like protein |
| trEMBL | tr|I1JRB8|I1JRB8_SOYBN | 0 | Uncharacterized protein {ECO:0000313|EnsemblPlants:GLYMA03G39690.1} |
Sequence
| Transcript Sequence |
|---|
| Protein Sequence |
|---|
Location information (JBrowse)
| Scaffold | Start | End | Strand |
|---|---|---|---|
| Scaffold00148 | 236841 | 243749 | + |
Gene family
| Gene family | subfamily |
|---|---|
| Carbohydrate-Active enzymes Family | CBM48 |
KEGG pathway
| KO | Enzyme | Enzyme ID | pathway | mapID |
|---|---|---|---|---|
| -- | -- | -- | -- | -- |
Gene Ontology
| Not hits found. |
Pfam domain
| Protein | Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|---|
| Glyur000148s00009066.1 | PF00571.23 | CBS | 331 | 374 | 3.30E-06 |
| Glyur000148s00009066.1 | PF00571.23 | CBS | 414 | 463 | 2.80E-12 |
Expression pattern
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR1783599 | control | 12.129 |
| SRR1783600 | control | 12.306 |
| SRR1783602 | moderate drought stress | 15.712 |
| SRR1811619 | moderate drought stress | 15.658 |
| SRA Experiment | Description | TPM |
|---|---|---|
| DRR006519 | Root Summer glycyrrhizin high producing strain | 15.701 |
| DRR006520 | Root Summer glycyrrhizin high producing strain | 15.944 |
| DRR006521 | Root Winter glycyrrhizin high producing strain | 24.355 |
| DRR006522 | Root Winter glycyrrhizin high producing strain | 24.028 |
| DRR006523 | Root Summer glycyrrhizin low producing strain | 16.613 |
| DRR006524 | Root Summer glycyrrhizin low producing strain | 16.999 |
| DRR006525 | Leaf Summer glycyrrhizin high producing strain | 8.562 |
| DRR006526 | Leaf Summer glycyrrhizin high producing strain | 8.380 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR2867873 | Salt Stress (root) | 31.340 |
| SRR2868004 | Drought Stress (root) | 38.867 |
| SRR2967015 | Control (root) | 38.650 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR9715738 | Leaf | 20.052 |
| SRR9715740 | Leaf | 19.509 |
| SRR9715741 | Leaf | 25.062 |
| SRR9715739 | Root | 8.344 |
| SRR9715742 | Root | 16.073 |
| SRR9715743 | Root | 14.413 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8749027 | MeJA induced 9h | 8.956 |
| SRR8749028 | MeJA induced 9h | 11.093 |
| SRR8749029 | MeJA induced 9h | 8.719 |
| SRR8749030 | Uninduced | 10.075 |
| SRR8749031 | Uninduced | 9.159 |
| SRR8749032 | Uninduced | 8.803 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8400026 | NaCl treatment - Root | 28.211 |
| SRR8400027 | Control - Root | 28.537 |