Gene detail information of Glyur000148s00009060.1 |
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| TAIR | AT5G27650.1 | 3.00E-171 | Tudor/PWWP/MBT superfamily protein |
| NR | XP_004494605.1 | 0 | PREDICTED: microtubule-associated protein futsch-like [Cicer arietinum] |
| Swissprot | tr|Q9M3G7|ATM_ARATH | 4.00E-07 | Serine/threonine-protein kinase ATM |
| trEMBL | tr|K7MZX8|K7MZX8_SOYBN | 0 | Uncharacterized protein {ECO:0000313|EnsemblPlants:GLYMA19G42260.2} |
Sequence
| Transcript Sequence |
|---|
| Protein Sequence |
|---|
Location information (JBrowse)
| Scaffold | Start | End | Strand |
|---|---|---|---|
| Scaffold00148 | 188747 | 194059 | - |
Gene family
| Gene family | subfamily |
|---|---|
| -- | -- |
KEGG pathway
| KO | Enzyme | Enzyme ID | pathway | mapID |
|---|---|---|---|---|
| K17398 | DNMT3A | EC:2.1.1.37 | Cysteine and methionine metabolism | map00270 |
| MicroRNAs in cancer | map05206 |
Gene Ontology
| Not hits found. |
Pfam domain
| Protein | Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|---|
| Glyur000148s00009060.1 | PF00855.12 | PWWP | 125 | 210 | 2.70E-21 |
Expression pattern
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR1783599 | control | 15.927 |
| SRR1783600 | control | 16.089 |
| SRR1783602 | moderate drought stress | 19.362 |
| SRR1811619 | moderate drought stress | 19.089 |
| SRA Experiment | Description | TPM |
|---|---|---|
| DRR006519 | Root Summer glycyrrhizin high producing strain | 15.474 |
| DRR006520 | Root Summer glycyrrhizin high producing strain | 15.358 |
| DRR006521 | Root Winter glycyrrhizin high producing strain | 11.305 |
| DRR006522 | Root Winter glycyrrhizin high producing strain | 10.943 |
| DRR006523 | Root Summer glycyrrhizin low producing strain | 16.276 |
| DRR006524 | Root Summer glycyrrhizin low producing strain | 16.066 |
| DRR006525 | Leaf Summer glycyrrhizin high producing strain | 9.806 |
| DRR006526 | Leaf Summer glycyrrhizin high producing strain | 9.792 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR2867873 | Salt Stress (root) | 16.997 |
| SRR2868004 | Drought Stress (root) | 17.589 |
| SRR2967015 | Control (root) | 19.295 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR9715738 | Leaf | 11.321 |
| SRR9715740 | Leaf | 11.818 |
| SRR9715741 | Leaf | 15.091 |
| SRR9715739 | Root | 6.290 |
| SRR9715742 | Root | 17.063 |
| SRR9715743 | Root | 15.201 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8749027 | MeJA induced 9h | 9.063 |
| SRR8749028 | MeJA induced 9h | 11.530 |
| SRR8749029 | MeJA induced 9h | 6.451 |
| SRR8749030 | Uninduced | 7.062 |
| SRR8749031 | Uninduced | 7.828 |
| SRR8749032 | Uninduced | 7.586 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8400026 | NaCl treatment - Root | 15.541 |
| SRR8400027 | Control - Root | 15.786 |