Gene detail information of Glyur000148s00009058 |
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| TAIR | AT5G27670.1 | 3.00E-35 | histone H2A 7 |
| NR | XP_008246411.1 | 4.70E-80 | PREDICTED: histone H2A.1-like [Prunus mume] |
| Swissprot | tr|Q94F49|H2A5_ARATH | 1.00E-76 | Probable histone H2A.5 |
| trEMBL | tr|A0A068VIM7|A0A068VIM7_COFCA | 5.00E-80 | Histone H2A {ECO:0000256|RuleBase:RU003556} |
Sequence
| Transcript Sequence |
|---|
| Protein Sequence |
|---|
Location information (JBrowse)
| Scaffold | Start | End | Strand |
|---|---|---|---|
| Scaffold00148 | 181605 | 182518 | + |
Gene family
| Gene family | subfamily |
|---|---|
| -- | -- |
KEGG pathway
| KO | Enzyme | Enzyme ID | pathway | mapID |
|---|---|---|---|---|
| -- | -- | -- | -- | -- |
Gene Ontology
|
Pfam domain
| Protein | Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|---|
| Glyur000148s00009058.1 | PF00125.19 | Histone | 24 | 96 | 1.10E-22 |
Expression pattern
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR1783599 | control | 8.469 |
| SRR1783600 | control | 8.617 |
| SRR1783602 | moderate drought stress | 6.655 |
| SRR1811619 | moderate drought stress | 6.553 |
| SRA Experiment | Description | TPM |
|---|---|---|
| DRR006519 | Root Summer glycyrrhizin high producing strain | 6.097 |
| DRR006520 | Root Summer glycyrrhizin high producing strain | 6.108 |
| DRR006521 | Root Winter glycyrrhizin high producing strain | 0.560 |
| DRR006522 | Root Winter glycyrrhizin high producing strain | 0.543 |
| DRR006523 | Root Summer glycyrrhizin low producing strain | 2.130 |
| DRR006524 | Root Summer glycyrrhizin low producing strain | 2.124 |
| DRR006525 | Leaf Summer glycyrrhizin high producing strain | 2.275 |
| DRR006526 | Leaf Summer glycyrrhizin high producing strain | 2.323 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR2867873 | Salt Stress (root) | 64.630 |
| SRR2868004 | Drought Stress (root) | 32.889 |
| SRR2967015 | Control (root) | 26.997 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR9715738 | Leaf | 29.821 |
| SRR9715740 | Leaf | 3.488 |
| SRR9715741 | Leaf | 8.288 |
| SRR9715739 | Root | 13.860 |
| SRR9715742 | Root | 7.096 |
| SRR9715743 | Root | 7.140 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8749027 | MeJA induced 9h | 127.899 |
| SRR8749028 | MeJA induced 9h | 75.659 |
| SRR8749029 | MeJA induced 9h | 69.641 |
| SRR8749030 | Uninduced | 25.176 |
| SRR8749031 | Uninduced | 25.942 |
| SRR8749032 | Uninduced | 17.601 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8400026 | NaCl treatment - Root | 53.212 |
| SRR8400027 | Control - Root | 41.414 |