Gene detail information of Glyur000148s00009047.1 |
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| TAIR | AT5G27730.1 | 1.00E-124 | Protein of unknown function (DUF1624) |
| NR | XP_003554642.1 | 0 | PREDICTED: heparan-alpha-glucosaminide N-acetyltransferase [Glycine max] |
| COG | YP_007143159.1 | 2.00E-29 | heparan-alpha-glucosaminide N-acetyltransferase [Crinalium epipsammum PCC 9333] |
| trEMBL | tr|I1NBX1|I1NBX1_SOYBN | 0 | Uncharacterized protein {ECO:0000313|EnsemblPlants:GLYMA19G42120.1} |
Sequence
| Transcript Sequence |
|---|
| Protein Sequence |
|---|
Location information (JBrowse)
| Scaffold | Start | End | Strand |
|---|---|---|---|
| Scaffold00148 | 107314 | 111977 | - |
Gene family
| Gene family | subfamily |
|---|---|
| -- | -- |
KEGG pathway
| KO | Enzyme | Enzyme ID | pathway | mapID |
|---|---|---|---|---|
| K10532 | HGSNAT | EC:2.3.1.78 | Glycosaminoglycan degradation | map00531 |
| Glycosaminoglycan degradation | map00531 | |||
| Lysosome | map04142 | |||
| Lysosome | map04142 |
Gene Ontology
| Not hits found. |
Pfam domain
| Protein | Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|---|
| Glyur000148s00009047.1 | PF07786.7 | DUF1624 | 31 | 157 | 2.40E-07 |
Expression pattern
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR1783599 | control | 11.452 |
| SRR1783600 | control | 11.636 |
| SRR1783602 | moderate drought stress | 14.533 |
| SRR1811619 | moderate drought stress | 14.653 |
| SRA Experiment | Description | TPM |
|---|---|---|
| DRR006519 | Root Summer glycyrrhizin high producing strain | 11.952 |
| DRR006520 | Root Summer glycyrrhizin high producing strain | 11.781 |
| DRR006521 | Root Winter glycyrrhizin high producing strain | 11.099 |
| DRR006522 | Root Winter glycyrrhizin high producing strain | 10.853 |
| DRR006523 | Root Summer glycyrrhizin low producing strain | 14.516 |
| DRR006524 | Root Summer glycyrrhizin low producing strain | 14.052 |
| DRR006525 | Leaf Summer glycyrrhizin high producing strain | 13.189 |
| DRR006526 | Leaf Summer glycyrrhizin high producing strain | 13.228 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR2867873 | Salt Stress (root) | 10.504 |
| SRR2868004 | Drought Stress (root) | 12.293 |
| SRR2967015 | Control (root) | 13.640 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR9715738 | Leaf | 27.243 |
| SRR9715740 | Leaf | 45.273 |
| SRR9715741 | Leaf | 34.370 |
| SRR9715739 | Root | 3.522 |
| SRR9715742 | Root | 7.517 |
| SRR9715743 | Root | 6.972 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8749027 | MeJA induced 9h | 11.156 |
| SRR8749028 | MeJA induced 9h | 11.855 |
| SRR8749029 | MeJA induced 9h | 10.471 |
| SRR8749030 | Uninduced | 5.912 |
| SRR8749031 | Uninduced | 2.722 |
| SRR8749032 | Uninduced | 3.059 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8400026 | NaCl treatment - Root | 13.431 |
| SRR8400027 | Control - Root | 13.752 |