Gene detail information of Glyur000148s00009046 |
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| TAIR | AT3G05560.3 | 3.00E-43 | Ribosomal L22e protein family |
| NR | AFK48844.1 | 9.66E-68 | unknown [Lotus japonicus] |
| Swissprot | tr|Q9M9W1|RL222_ARATH | 2.00E-65 | 60S ribosomal protein L22-2 |
| trEMBL | tr|I3T8K2|I3T8K2_LOTJA | 4.00E-68 | Uncharacterized protein {ECO:0000313|EMBL:AFK48844.1} |
Sequence
| Transcript Sequence |
|---|
| Protein Sequence |
|---|
Location information (JBrowse)
| Scaffold | Start | End | Strand |
|---|---|---|---|
| Scaffold00148 | 104881 | 106628 | - |
Gene family
| Gene family | subfamily |
|---|---|
| -- | -- |
KEGG pathway
| KO | Enzyme | Enzyme ID | pathway | mapID |
|---|---|---|---|---|
| -- | -- | -- | -- | -- |
Gene Ontology
|
Pfam domain
| Protein | Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|---|
| Glyur000148s00009046.1 | PF01776.12 | Ribosomal_L22e | 12 | 123 | 1.90E-46 |
Expression pattern
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR1783599 | control | 55.990 |
| SRR1783600 | control | 56.379 |
| SRR1783602 | moderate drought stress | 56.377 |
| SRR1811619 | moderate drought stress | 55.687 |
| SRA Experiment | Description | TPM |
|---|---|---|
| DRR006519 | Root Summer glycyrrhizin high producing strain | 177.524 |
| DRR006520 | Root Summer glycyrrhizin high producing strain | 175.587 |
| DRR006521 | Root Winter glycyrrhizin high producing strain | 94.792 |
| DRR006522 | Root Winter glycyrrhizin high producing strain | 92.731 |
| DRR006523 | Root Summer glycyrrhizin low producing strain | 150.233 |
| DRR006524 | Root Summer glycyrrhizin low producing strain | 149.750 |
| DRR006525 | Leaf Summer glycyrrhizin high producing strain | 56.716 |
| DRR006526 | Leaf Summer glycyrrhizin high producing strain | 56.731 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR2867873 | Salt Stress (root) | 313.906 |
| SRR2868004 | Drought Stress (root) | 198.593 |
| SRR2967015 | Control (root) | 178.934 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR9715738 | Leaf | 146.817 |
| SRR9715740 | Leaf | 121.808 |
| SRR9715741 | Leaf | 118.462 |
| SRR9715739 | Root | 148.169 |
| SRR9715742 | Root | 128.168 |
| SRR9715743 | Root | 131.450 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8749027 | MeJA induced 9h | 319.316 |
| SRR8749028 | MeJA induced 9h | 122.355 |
| SRR8749029 | MeJA induced 9h | 225.810 |
| SRR8749030 | Uninduced | 49.215 |
| SRR8749031 | Uninduced | 29.544 |
| SRR8749032 | Uninduced | 58.990 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8400026 | NaCl treatment - Root | 250.548 |
| SRR8400027 | Control - Root | 209.941 |