Gene detail information of Glyur000148s00009032 |
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| TAIR | AT5G27920.1 | 3.00E-160 | F-box family protein |
| NR | XP_003521679.1 | 0 | PREDICTED: F-box/LRR-repeat protein 3-like [Glycine max] |
| COG | YP_008953.1 | 8.00E-31 | hypothetical protein pc1954 [Candidatus Protochlamydia amoebophila UWE25] |
| Swissprot | tr|Q8RWU5|FBL3_ARATH | 3.00E-116 | F-box/LRR-repeat protein 3 |
| trEMBL | tr|K7KGM0|K7KGM0_SOYBN | 0 | Uncharacterized protein {ECO:0000313|EnsemblPlants:GLYMA03G39350.2} |
Sequence
| Transcript Sequence |
|---|
| Protein Sequence |
|---|
Location information (JBrowse)
| Scaffold | Start | End | Strand |
|---|---|---|---|
| Scaffold00148 | 38294 | 42618 | + |
Gene family
| Gene family | subfamily |
|---|---|
| -- | -- |
KEGG pathway
| KO | Enzyme | Enzyme ID | pathway | mapID |
|---|---|---|---|---|
| -- | -- | -- | -- | -- |
Gene Ontology
| Not hits found. |
Pfam domain
| Protein | Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|---|
| Glyur000148s00009032.1 | PF13516.1 | LRR_6 | 63 | 83 | 1.8 |
| Glyur000148s00009032.1 | PF13516.1 | LRR_6 | 349 | 372 | 0.75 |
| Glyur000148s00009032.1 | PF13516.1 | LRR_6 | 452 | 474 | 0.028 |
| Glyur000148s00009032.1 | PF13516.1 | LRR_6 | 478 | 501 | 0.034 |
Expression pattern
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR1783599 | control | 8.887 |
| SRR1783600 | control | 8.867 |
| SRR1783602 | moderate drought stress | 11.545 |
| SRR1811619 | moderate drought stress | 11.356 |
| SRA Experiment | Description | TPM |
|---|---|---|
| DRR006519 | Root Summer glycyrrhizin high producing strain | 7.034 |
| DRR006520 | Root Summer glycyrrhizin high producing strain | 7.145 |
| DRR006521 | Root Winter glycyrrhizin high producing strain | 13.655 |
| DRR006522 | Root Winter glycyrrhizin high producing strain | 13.269 |
| DRR006523 | Root Summer glycyrrhizin low producing strain | 5.109 |
| DRR006524 | Root Summer glycyrrhizin low producing strain | 5.027 |
| DRR006525 | Leaf Summer glycyrrhizin high producing strain | 7.470 |
| DRR006526 | Leaf Summer glycyrrhizin high producing strain | 7.290 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR2867873 | Salt Stress (root) | 14.601 |
| SRR2868004 | Drought Stress (root) | 13.665 |
| SRR2967015 | Control (root) | 17.215 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR9715738 | Leaf | 8.839 |
| SRR9715740 | Leaf | 11.074 |
| SRR9715741 | Leaf | 13.008 |
| SRR9715739 | Root | 7.417 |
| SRR9715742 | Root | 11.883 |
| SRR9715743 | Root | 11.223 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8749027 | MeJA induced 9h | 6.304 |
| SRR8749028 | MeJA induced 9h | 5.196 |
| SRR8749029 | MeJA induced 9h | 4.542 |
| SRR8749030 | Uninduced | 7.950 |
| SRR8749031 | Uninduced | 6.766 |
| SRR8749032 | Uninduced | 11.111 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8400026 | NaCl treatment - Root | 26.550 |
| SRR8400027 | Control - Root | 21.726 |