Gene detail information of Glyur000148s00009026 |
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| TAIR | AT3G05640.2 | 1.00E-145 | Protein phosphatase 2C family protein |
| NR | XP_003626188.1 | 0 | hypothetical protein MTR_7g112490 [Medicago truncatula] |
| Swissprot | tr|Q0WRB2|P2C73_ARATH | 0 | Probable protein phosphatase 2C 73 |
| trEMBL | tr|G7KWJ4|G7KWJ4_MEDTR | 0 | Protein phosphatase 2C family protein {ECO:0000313|EMBL:AES82406.1} |
Sequence
| Transcript Sequence |
|---|
| Protein Sequence |
|---|
Location information (JBrowse)
| Scaffold | Start | End | Strand |
|---|---|---|---|
| Scaffold00148 | 1486 | 5326 | - |
Gene family
| Gene family | subfamily |
|---|---|
| -- | -- |
KEGG pathway
| KO | Enzyme | Enzyme ID | pathway | mapID |
|---|---|---|---|---|
| -- | -- | -- | -- | -- |
Gene Ontology
|
Pfam domain
| Protein | Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|---|
| Glyur000148s00009026.1 | PF00481.16 | PP2C | 84 | 327 | 2.90E-37 |
Expression pattern
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR1783599 | control | 10.958 |
| SRR1783600 | control | 10.895 |
| SRR1783602 | moderate drought stress | 18.060 |
| SRR1811619 | moderate drought stress | 17.843 |
| SRA Experiment | Description | TPM |
|---|---|---|
| DRR006519 | Root Summer glycyrrhizin high producing strain | 12.263 |
| DRR006520 | Root Summer glycyrrhizin high producing strain | 12.126 |
| DRR006521 | Root Winter glycyrrhizin high producing strain | 34.150 |
| DRR006522 | Root Winter glycyrrhizin high producing strain | 32.682 |
| DRR006523 | Root Summer glycyrrhizin low producing strain | 9.849 |
| DRR006524 | Root Summer glycyrrhizin low producing strain | 9.752 |
| DRR006525 | Leaf Summer glycyrrhizin high producing strain | 25.429 |
| DRR006526 | Leaf Summer glycyrrhizin high producing strain | 25.335 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR2867873 | Salt Stress (root) | 42.288 |
| SRR2868004 | Drought Stress (root) | 79.372 |
| SRR2967015 | Control (root) | 66.605 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR9715738 | Leaf | 15.874 |
| SRR9715740 | Leaf | 24.150 |
| SRR9715741 | Leaf | 13.164 |
| SRR9715739 | Root | 6.105 |
| SRR9715742 | Root | 10.093 |
| SRR9715743 | Root | 9.577 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8749027 | MeJA induced 9h | 0.237 |
| SRR8749028 | MeJA induced 9h | 0.149 |
| SRR8749029 | MeJA induced 9h | 0.439 |
| SRR8749030 | Uninduced | 0.486 |
| SRR8749031 | Uninduced | 0.560 |
| SRR8749032 | Uninduced | 0.640 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8400026 | NaCl treatment - Root | 35.249 |
| SRR8400027 | Control - Root | 38.213 |