Gene detail information of Glyur000147s00013878.1 |
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| TAIR | AT1G66140.1 | 4.00E-43 | zinc finger protein 4 |
| NR | NP_001241479.1 | 5.91E-134 | uncharacterized protein LOC100794851 [Glycine max] |
| Swissprot | tr|Q39263|ZFP4_ARATH | 9.00E-53 | Zinc finger protein 4 |
| trEMBL | tr|C6T8Q3|C6T8Q3_SOYBN | 2.00E-134 | Uncharacterized protein {ECO:0000313|EnsemblPlants:GLYMA14G39280.1} |
Sequence
| Transcript Sequence |
|---|
| Protein Sequence |
|---|
Location information (JBrowse)
| Scaffold | Start | End | Strand |
|---|---|---|---|
| Scaffold00147 | 284915 | 285685 | + |
Gene family
| Gene family | subfamily |
|---|---|
| Transcription Factors Family | C2H2 |
| EAR motif-containing Proteins | C2H2 |
KEGG pathway
| KO | Enzyme | Enzyme ID | pathway | mapID |
|---|---|---|---|---|
| -- | -- | -- | -- | -- |
Gene Ontology
|
Pfam domain
| Protein | Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|---|
| -- | -- | -- | -- | -- | -- |
Expression pattern
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR1783599 | control | 19.218 |
| SRR1783600 | control | 19.278 |
| SRR1783602 | moderate drought stress | 15.955 |
| SRR1811619 | moderate drought stress | 16.287 |
| SRA Experiment | Description | TPM |
|---|---|---|
| DRR006519 | Root Summer glycyrrhizin high producing strain | 17.836 |
| DRR006520 | Root Summer glycyrrhizin high producing strain | 16.964 |
| DRR006521 | Root Winter glycyrrhizin high producing strain | 13.125 |
| DRR006522 | Root Winter glycyrrhizin high producing strain | 12.112 |
| DRR006523 | Root Summer glycyrrhizin low producing strain | 14.605 |
| DRR006524 | Root Summer glycyrrhizin low producing strain | 13.993 |
| DRR006525 | Leaf Summer glycyrrhizin high producing strain | 29.006 |
| DRR006526 | Leaf Summer glycyrrhizin high producing strain | 26.042 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR2867873 | Salt Stress (root) | 61.256 |
| SRR2868004 | Drought Stress (root) | 73.391 |
| SRR2967015 | Control (root) | 100.843 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR9715738 | Leaf | 13.034 |
| SRR9715740 | Leaf | 12.493 |
| SRR9715741 | Leaf | 13.247 |
| SRR9715739 | Root | 6.706 |
| SRR9715742 | Root | 12.708 |
| SRR9715743 | Root | 9.528 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8749027 | MeJA induced 9h | 1.256 |
| SRR8749028 | MeJA induced 9h | 1.437 |
| SRR8749029 | MeJA induced 9h | 0.260 |
| SRR8749030 | Uninduced | 1.662 |
| SRR8749031 | Uninduced | 0.795 |
| SRR8749032 | Uninduced | 0.120 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8400026 | NaCl treatment - Root | 31.894 |
| SRR8400027 | Control - Root | 24.060 |