Gene detail

Gene detail information of Glyur000147s00013875.1

Functional Annotation

Database	Orthologs	E value	Annotation
TAIR	AT1G66160.1	4.00E-93	CYS, MET, PRO, and GLY protein 1
NR	XP_003544976.1	0	PREDICTED: U-box domain-containing protein 21-like [Glycine max]
COG	YP_001957952.1	5.00E-12	hypothetical protein Aasi_0852 [Candidatus Amoebophilus asiaticus 5a2]
Swissprot	tr\|Q9C8D1\|PUB20_ARATH	8.00E-113	U-box domain-containing protein 20
trEMBL	tr\|I1MBT5\|I1MBT5_SOYBN	0	Uncharacterized protein {ECO:0000313\|EnsemblPlants:GLYMA14G39300.1}

Sequence

Transcript Sequence

>Glyur000147s00013875.1
ATGGTTTTGTCATGGACAAGAGGGAGGGTTTTCCGGCGATCCCGGAAGGGACCGAAAGAGTTGAATTCCGGCACCGGCTCCGGCGATTTGGAAGTGGAGATTGCAATCCCAACACATTTCCGGTGCCCGGTGACACTCGACCTAATGAGAGACCCCGTCACGATTTCCACGGGCATAACCTACGACAGAGACAGCATCGAGAAATGGATCGAAGCAGGGAACAGAACCTGCCCTGTCACAAAGAGAGAGTTGACCAGCGTTGACCACATGATCCCAAACCACGCCCTTCGTAGAATGATTCAAGAATGGTGCGTTCAGCACCGTTCCCACGGGATCGAGAGGATCCCAACCCCTCGGATCCCGGTNACNCCCTACGAGGTAACCGACACGTGTACGAGGATCCTGTCGGCGGCNCAAAACGGCGACGAGGGCACGTGNNTGGCGCACGTGCGGAAGGTGAAGGCTTGGGGGAAAGAGAGTGAGAGGAACAAGAGGTGTATTGTAGCCAATGGTGCTCCAATTGTGCTGGTCAAAGCCTTTGACTCTTTCTGNAAGAACAAGAATAGTAGTGTTAGTGTTGTTGTTGTTGTTTTGGAAGAGATTCTGGGGGTGCTGACGTGGATGCGTCCTCTTTCACAAGAGGGTAGATCCATTTTGGGTTCTTCTCCAACTTCTATTAGTTGCTTGGTTTGGTTCCTAAATGAAAATACACAAAAAAACCTCTCAACAACTAAGCAAAGTTCTGTTTTGTTGCTAAAGGAGATGCCTTTTGAGGCATTGGCAAAAACAGAAGGGATTGTTGAATCATTGGTGAACATGATTAAAGACCCTGTTGGTACAAAAGCATGTTTGTCAACAATTTTTCACTTGGTTAATGTTTCCTCATCNGAAGGGGATAATAGAAAGGCAATGATCTCGGAGAGATTTGTGGAATTGGGTTTGGTTTCGATTTTATTGGAGACACTTGTTGATGCGGAGAGAGGGGTGTGTGAGAAGGCTTTAGGGGTGTTGGATTGTGTTCTTTGTGTGAGTAAACGTGGGGTTGAAATTGCCAAGGGAAATGCTTTGACTTTACCTCTTGTGATTAAGAAGCTTTTGAGGGTATCTGAATTGAGTTCAAGTTTTGCGGTTTCTATTCTTTACAAGGTTTGTGATGGTGCTGAGGAAGGGGTTTTGATTGAGGCACTTCAAGTTGGGGTGTTTCAGAAACTACTTGTTCTGCTTCAGGTGGGTTGTGATGAGGGTACAAAGGAGAAGGCTACTGAGTTGTTGAGGTTGTTGAATGGTTATAGGAGCAAAGCTGAGTGTGTTGATTCATCATCACTTGATTTCAAGCACCTTAAGAAGCCCTTCTAA

Protein Sequence

Location information (JBrowse)

Scaffold	Start	End	Strand
Scaffold00147	260309	261664	-

Gene family

Gene family	subfamily
Ubiquitin Family	U_box

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID
--	--	--	--	--

Gene Ontology

biological_process
GO:0016567 protein ubiquitination

molecular_function

GO:0004842 ubiquitin-protein transferase activity

GO:0005488 binding

Pfam domain

Protein	Pfam accession	Pfam name	Alignment start	Alignment end	E-value
Glyur000147s00013875.1	PF04564.10	U-box	36	108	7.30E-21

Expression pattern

SRP053019

SRA Experiment	Description	TPM
SRR1783599	control	0.770
SRR1783600	control	0.728
SRR1783602	moderate drought stress	0.478
SRR1811619	moderate drought stress	0.364

DRP000996

SRA Experiment	Description	TPM
DRR006519	Root Summer glycyrrhizin high producing strain	83.310
DRR006520	Root Summer glycyrrhizin high producing strain	80.102
DRR006521	Root Winter glycyrrhizin high producing strain	0.494
DRR006522	Root Winter glycyrrhizin high producing strain	0.482
DRR006523	Root Summer glycyrrhizin low producing strain	76.635
DRR006524	Root Summer glycyrrhizin low producing strain	80.523
DRR006525	Leaf Summer glycyrrhizin high producing strain	22.064
DRR006526	Leaf Summer glycyrrhizin high producing strain	21.756

SRP065514

SRA Experiment	Description	TPM
SRR2867873	Salt Stress (root)	20.066
SRR2868004	Drought Stress (root)	94.967
SRR2967015	Control (root)	258.757

SRP215420

SRA Experiment	Description	TPM
SRR9715738	Leaf	381.174
SRR9715740	Leaf	188.731
SRR9715741	Leaf	475.573
SRR9715739	Root	237.016
SRR9715742	Root	411.155
SRR9715743	Root	384.746

SRP188776

SRA Experiment	Description	TPM
SRR8749027	MeJA induced 9h	128.161
SRR8749028	MeJA induced 9h	106.499
SRR8749029	MeJA induced 9h	68.047
SRR8749030	Uninduced	375.329
SRR8749031	Uninduced	119.033
SRR8749032	Uninduced	119.050

SRP175571

SRA Experiment	Description	TPM
SRR8400026	NaCl treatment - Root	36.497
SRR8400027	Control - Root	57.762