Gene detail information of Glyur000147s00013859 |
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| TAIR | AT2G27790.2 | 7.00E-75 | RNA-binding (RRM/RBD/RNP motifs) family protein |
| NR | XP_003616248.1 | 1.33E-139 | hypothetical protein MTR_5g077780 [Medicago truncatula] |
| trEMBL | tr|G7KG19|G7KG19_MEDTR | 5.00E-140 | RNA recognition motif protein {ECO:0000313|EMBL:AES99206.1} |
Sequence
| Transcript Sequence |
|---|
| Protein Sequence |
|---|
Location information (JBrowse)
| Scaffold | Start | End | Strand |
|---|---|---|---|
| Scaffold00147 | 188056 | 192051 | + |
Gene family
| Gene family | subfamily |
|---|---|
| -- | -- |
KEGG pathway
| KO | Enzyme | Enzyme ID | pathway | mapID |
|---|---|---|---|---|
| -- | -- | -- | -- | -- |
Gene Ontology
|
Pfam domain
| Protein | Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|---|
| Glyur000147s00013859.1 | PF13893.1 | RRM_5 | 37 | 97 | 0.0001 |
Expression pattern
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR1783599 | control | 8.516 |
| SRR1783600 | control | 8.341 |
| SRR1783602 | moderate drought stress | 7.447 |
| SRR1811619 | moderate drought stress | 7.303 |
| SRA Experiment | Description | TPM |
|---|---|---|
| DRR006519 | Root Summer glycyrrhizin high producing strain | 26.771 |
| DRR006520 | Root Summer glycyrrhizin high producing strain | 25.590 |
| DRR006521 | Root Winter glycyrrhizin high producing strain | 13.762 |
| DRR006522 | Root Winter glycyrrhizin high producing strain | 13.383 |
| DRR006523 | Root Summer glycyrrhizin low producing strain | 25.828 |
| DRR006524 | Root Summer glycyrrhizin low producing strain | 25.386 |
| DRR006525 | Leaf Summer glycyrrhizin high producing strain | 3.761 |
| DRR006526 | Leaf Summer glycyrrhizin high producing strain | 3.856 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR2867873 | Salt Stress (root) | 25.093 |
| SRR2868004 | Drought Stress (root) | 29.780 |
| SRR2967015 | Control (root) | 25.754 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR9715738 | Leaf | 5.687 |
| SRR9715740 | Leaf | 6.843 |
| SRR9715741 | Leaf | 7.850 |
| SRR9715739 | Root | 4.018 |
| SRR9715742 | Root | 11.123 |
| SRR9715743 | Root | 10.067 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8749027 | MeJA induced 9h | 22.848 |
| SRR8749028 | MeJA induced 9h | 13.694 |
| SRR8749029 | MeJA induced 9h | 22.893 |
| SRR8749030 | Uninduced | 11.766 |
| SRR8749031 | Uninduced | 6.345 |
| SRR8749032 | Uninduced | 11.576 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8400026 | NaCl treatment - Root | 33.624 |
| SRR8400027 | Control - Root | 34.013 |