Gene detail

Gene detail information of Glyur000147s00013842.1

Functional Annotation

Database	Orthologs	E value	Annotation
TAIR	AT1G48480.1	3.00E-165	receptor-like kinase 1
NR	XP_003616273.1	0	Leucine-rich repeat transmembrane protein [Medicago truncatula]
COG	YP_004579826.1	2.00E-24	hypothetical protein [Lacinutrix sp. 5H-3-7-4]
Swissprot	tr\|Q9LP77\|Y1848_ARATH	0	Probable inactive receptor kinase At1g48480 (Precursor)
trEMBL	tr\|G7K1N3\|G7K1N3_MEDTR	0	LRR receptor-like kinase {ECO:0000313\|EMBL:AES99231.1}

Sequence

Transcript Sequence

>Glyur000147s00013842.1
CCGCGTTGCAACATTGGCGTTTCTCCTACACGTGAACGTACGATAACATTTNCTCCTCTCATAAAAAGCGAACCCAATTCTCTTTCTCTCCAACCTCGCGAAAGGGTTTTGATGATATAATACGTGANACCCACCACCCTCATTCACGCCACTCTCACTCTCCCTTTCTATCCTTTTTTTTCTTTTCTTCTTCTTTTCCGTCTCTGTCTAATTTTTTTCCTGCGTTTTCTCAGCACCCAAACAACACAAAAGCGAATCCCATTCNCCTCGGGATTCCCAATGGCGCTTCTGCTTCCTCCCTAGCCTTACNCATTTCCCCGAATTCGCCTCAAAGCATCCACCTTGGTAAGAGAAACACAGTCAAAATGAAGCCTCCTCTGTTGCTTCTGGTTTGTTTTACTTTGTGCCTCATTGCCATTGTCTCCGGCGNCGATCTAGCTTCCGACAGGTTGAGCCTGGTGGCTCTGCGCGGCGCCGTCGGTGGCCGAACCCTCTTATGGAACGTGACGAATCCCAACCCGTGTTCGTGGACCGGAGTTGTCTGCAACAACCGTAGGGTAACGGCGTTGCGTCTCCCGGCGATGGGTCTCTCCGGTNACCTCCCTTCGGGTTTAGGGAACCTTACTGAACTGCAGGCACTTTCCCTCCGGTTCAACGCACTAACCGGACCAATCCCACCCGATTTCTCCGAACTCCACTCCCTTCGTAACCTCTACCTCCAAAACAACTTTTTCTCCGGTGAGGTTCCTGAATTCGTGTTCAGTCTTCAGAACCTTGTGAGGTTGAATTTGGGTGGAAACAATCTCAGTGGAGAGATCTCTCCCAAGTTCAATAGCCTCACTCGTTTGGACACACTCTACTTGGACCGAAACGGGTTCACCGGTTCAGTCCCTGACCTCAGTGTACCTCCCTTGAACCAGTTCAACGTGTCAAACAACCGGTTAACCGGGTCAATTCCCAAAAGGTTCTCGCGTTTGGACCAAACCGCTTTCACCGGAAACTCCCTCTGCGGAAAGCCCCTTCAACTAACTTGCCCAAACAGCAACAAAGGCAACAACTTATCCGGTGGAGCCATTGCGGGTATTGTCATTGGTTCCTTCTTTGGTGTGTTGCTTCTTCTGCTTCTTTTGTTCCTCTTGTGTAGAAAAAGAAGGAAAAACGACCCCAATGATGTCGCACGTGCCAAGCGTGTGGAGGATGAGGTGTCACGTGACAAAGATGGTGCCGAGAGTGGCGGTGTTGGNGGTGCGAGAAATTCGGCTTCGGCTTCGGCGTCGGCTTCGGCGGTGGTGTCGACGTCGGAGAAGAGTCACGATGTGAAGAGTTTGGTGTTTATTGGGGATGTGAATAGAGCGTTTAGTTTGGATGAGTTGCTTAGAGCTTCTGCTGAAGTTCTGGGAAAGGGTACGTTTGGAACAACGTATAAGGCTACCCTTGAGATGGGAACAAGCGTGGCGGTGAAGAGGTTGAAGGATGTGACGGTTACGGAGAGGGAATTCAGGGAGAAGATTGAACAGGTTGGGAAGATGGTTCATGAGAATTTGGTCCCACTTAGGGGTTACTATTTTAGCAGGGACGAGAAACTCATTGTGTATGATTACATGCCAATGGGAAGCTTATCCGCACTCTTACATGCAAATAATGGAGCTGGAAGGACTCCACTGAATTGGGAAACAAGGTCTGCCATTGCCCTTGGTGCTGCCCATGGGATTGCATACCTACACTCACAAGGACCGACAGCTTCCCATGGAAACATCAAGTCATCCAATATCCTCCTCACCAAAACTTTCGAAGCCCGTGTCTCTGACTTTGGCCTTGCTCATCTCGCTCTCCCGACCTCTACGCCCAACCGGGTATCCGGTTACCGCGCCCCNGAGGTCACCGATGCCCGCAAAGTATCCCAAAAGGCGGATGTCTATAGCTTCGGCATAATGCTCCTTGAGCTTCTCACAGGGAAGGCTCCTACTCATTCTTCACTGAATGAAGATGGGGTAGACCTCCCAAGATGGGTCCAATCTGTGGTTCAAGAGGAGTGGAACACTGAGGTTTTCGACATGGAGCTTCTCAGGTACCAAAATGTTGAGGAGGAAATGGTCAAGCTCTTGGAGCTTGCTCTTGAATGCACTGCTCAGTATCCTGACAAGAGGCCTTCAATGGATGTGGTGGCAAGCAAGATTCAAGAAATTTGTCAACCTAGTTTAGAGAAAGGCGAATCGCGATTTGCTTAAAGATGTGGATAATTGATTTTCCAACAACAGTACTATTCTGTTGATTCGGGTGCATCACAACACAAGCTTGAGTATAGTGAATTGAAGAGGGACCCCATTTATTTCATCATTGGCCTGTATTTGGCATGCATATTATAGTGTTGTTTGTTGATTCATTGAAGGATTATTGAATCCAGCTGTTCCATGCTTTTTTTTTGGCCTTACCTCGCTCTCCTTTCAGTTCCATTTT

Protein Sequence

Location information (JBrowse)

Scaffold	Start	End	Strand
Scaffold00147	104925	108501	-

Gene family

Gene family	subfamily
Protein Kinases Family	PPC:1.13.3

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID
--	--	--	--	--

Gene Ontology

biological_process
GO:0006468 protein phosphorylation

molecular_function

GO:0004672 protein kinase activity

GO:0005515 protein binding

GO:0005524 ATP binding

GO:0016772 transferase activity, transferring phosphorus-containing groups

Pfam domain

Protein	Pfam accession	Pfam name	Alignment start	Alignment end	E-value
Glyur000147s00013842.1	PF08263.7	LRRNT_2	25	61	4.10E-07
Glyur000147s00013842.1	PF00560.28	LRR_1	136	158	0.22
Glyur000147s00013842.1	PF00560.28	LRR_1	185	204	1
Glyur000147s00013842.1	PF00069.20	Pkinase	342	600	1.60E-37

Expression pattern

SRP053019

SRA Experiment	Description	TPM
SRR1783599	control	21.342
SRR1783600	control	21.346
SRR1783602	moderate drought stress	12.608
SRR1811619	moderate drought stress	12.638

DRP000996

SRA Experiment	Description	TPM
DRR006519	Root Summer glycyrrhizin high producing strain	23.146
DRR006520	Root Summer glycyrrhizin high producing strain	22.686
DRR006521	Root Winter glycyrrhizin high producing strain	0.812
DRR006522	Root Winter glycyrrhizin high producing strain	0.791
DRR006523	Root Summer glycyrrhizin low producing strain	15.413
DRR006524	Root Summer glycyrrhizin low producing strain	15.531
DRR006525	Leaf Summer glycyrrhizin high producing strain	10.130
DRR006526	Leaf Summer glycyrrhizin high producing strain	10.199

SRP065514

SRA Experiment	Description	TPM
SRR2867873	Salt Stress (root)	37.119
SRR2868004	Drought Stress (root)	26.131
SRR2967015	Control (root)	23.696

SRP215420

SRA Experiment	Description	TPM
SRR9715738	Leaf	9.200
SRR9715740	Leaf	5.125
SRR9715741	Leaf	5.355
SRR9715739	Root	30.957
SRR9715742	Root	24.796
SRR9715743	Root	25.116

SRP188776

SRA Experiment	Description	TPM
SRR8749027	MeJA induced 9h	10.918
SRR8749028	MeJA induced 9h	5.926
SRR8749029	MeJA induced 9h	4.276
SRR8749030	Uninduced	1.225
SRR8749031	Uninduced	0.197
SRR8749032	Uninduced	0.829

SRP175571

SRA Experiment	Description	TPM
SRR8400026	NaCl treatment - Root	28.458
SRR8400027	Control - Root	40.700