Gene detail information of Glyur000147s00013836.1 |
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| TAIR | AT1G66250.1 | 0 | O-Glycosyl hydrolases family 17 protein |
| NR | XP_007141916.1 | 0 | hypothetical protein PHAVU_008G236700g [Phaseolus vulgaris] |
| Swissprot | tr|Q9C7U5|E132_ARATH | 0 | Glucan endo-1,3-beta-glucosidase 2 (Precursor) |
| trEMBL | tr|K7M8E9|K7M8E9_SOYBN | 0 | Uncharacterized protein {ECO:0000313|EnsemblPlants:GLYMA14G39510.2} (Fragment) |
Sequence
| Transcript Sequence |
|---|
| Protein Sequence |
|---|
Location information (JBrowse)
| Scaffold | Start | End | Strand |
|---|---|---|---|
| Scaffold00147 | 52780 | 55922 | - |
Gene family
| Gene family | subfamily |
|---|---|
| Carbohydrate-Active enzymes Family | GH17,CBM43 |
KEGG pathway
| KO | Enzyme | Enzyme ID | pathway | mapID |
|---|---|---|---|---|
| K19891 | GN1_2_3 | EC:3.2.1.39 | Starch and sucrose metabolism | map00500 |
Gene Ontology
|
Pfam domain
| Protein | Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|---|
| Glyur000147s00013836.1 | PF00332.13 | Glyco_hydro_17 | 24 | 343 | 9.40E-91 |
| Glyur000147s00013836.1 | PF07983.8 | X8 | 361 | 413 | 5.30E-06 |
Expression pattern
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR1783599 | control | 22.813 |
| SRR1783600 | control | 23.546 |
| SRR1783602 | moderate drought stress | 14.337 |
| SRR1811619 | moderate drought stress | 14.295 |
| SRA Experiment | Description | TPM |
|---|---|---|
| DRR006519 | Root Summer glycyrrhizin high producing strain | 20.688 |
| DRR006520 | Root Summer glycyrrhizin high producing strain | 20.048 |
| DRR006521 | Root Winter glycyrrhizin high producing strain | 0.205 |
| DRR006522 | Root Winter glycyrrhizin high producing strain | 0.167 |
| DRR006523 | Root Summer glycyrrhizin low producing strain | 7.847 |
| DRR006524 | Root Summer glycyrrhizin low producing strain | 7.617 |
| DRR006525 | Leaf Summer glycyrrhizin high producing strain | 3.333 |
| DRR006526 | Leaf Summer glycyrrhizin high producing strain | 3.239 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR2867873 | Salt Stress (root) | 12.735 |
| SRR2868004 | Drought Stress (root) | 5.845 |
| SRR2967015 | Control (root) | 7.777 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR9715738 | Leaf | 4.293 |
| SRR9715740 | Leaf | 2.081 |
| SRR9715741 | Leaf | 1.735 |
| SRR9715739 | Root | 10.327 |
| SRR9715742 | Root | 6.472 |
| SRR9715743 | Root | 5.662 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8749027 | MeJA induced 9h | 25.736 |
| SRR8749028 | MeJA induced 9h | 7.476 |
| SRR8749029 | MeJA induced 9h | 13.765 |
| SRR8749030 | Uninduced | 1.065 |
| SRR8749031 | Uninduced | 0.177 |
| SRR8749032 | Uninduced | 1.180 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8400026 | NaCl treatment - Root | 19.481 |
| SRR8400027 | Control - Root | 23.540 |