Gene detail

Gene detail information of Glyur000147s00013835

Functional Annotation

Database	Orthologs	E value	Annotation
TAIR	AT5G37690.1	3.00E-146	SGNH hydrolase-type esterase superfamily protein
NR	AES99241.2	0	GDSL-like lipase/acylhydrolase [Medicago truncatula]
COG	NP_923900.1	2.00E-20	esterase [Gloeobacter violaceus PCC 7421]
Swissprot	tr\|Q9FHQ1\|GDL80_ARATH	0	GDSL esterase/lipase At5g37690 (Precursor)
trEMBL	tr\|G7K1P3\|G7K1P3_MEDTR	0	GDSL-like lipase/acylhydrolase {ECO:0000313\|EMBL:AES99241.2}

Sequence

Transcript Sequence

>Glyur000147s00013835.1
ATGTCATTGTCAATGCCAAGATTGCAGGTTTTTGTGGCCTGTATCTTCTCACTGGCAGCAATTGCTTTAGCAGCTCAGCCTGTGACTTATATCTTTGGTGACTCCTTAACAGATGTTGGGAACAATAATTTTCTACAATATTCTTTGGCAAAATCTAACTATCCATGGTATGGGATTGACTATAGTGGTGGCCAGGCTACNGGGAGATTCACCAATGGGAGGACTATTGGTGATATCATATCTGCAAAGCTTGGAATCCCATCACCACCAGCTTATCTGTCAGTGTCTCAAAATGTAGATGCACTCCTCAAGGGGGTAAACTATGCATCTGGTGGGGCAGGAATTCTCAATGATACAGGACTTTACTTTATTCAAAGATTATCTTTTGATGATCAAATAAACAATTTCGAGAAAACCAAAGAAGCAATCACAGCAANATTAGGTGAGGCAGCTGCCACCAAGCATTTCAATGAAGCCATGCATTTCATTGGAATCGGAAGTAATGACTATGTCAACAATTTCTTGCAACCCTTCTTAGCAGATGGCCAGCAATACACTCATGATGAATTCCTAGAGCTCTTAATCTCAACCTTGGATCAACAACTTCAGAGACTCTATCAGCTTGGGGCACAAAAAATTGTCTTCCATGGACTTGGTCCACTCGGTTGCATTCCATCACAAAGGGTTAAATCCAAAACAGGCCAATGTCTAAAGCGAGTCAATGAATGGATCCAACAATTCAACTCCAACGTACAAAAGCTAATCAACAATCTAAACCATCGTCTTCCAAATGCAAAACTCCTCTTCGCAGACACCTATCCTTTAGTTCTTGACTTGATCGACAATCCATCTGATTATGGTTTTAAAGTTTCAAACACGTCTTGTTGCAATGTAGACACAAGCATTGGGGGTTTATGTTTGCCAAACTCAAAGTTGTGCAGAAACCGCAATGAGTATGTATTTTGGGATGCCTTTCATCCNTCAGATGCAGCAAATGCTATTCTTGCAGAAAAGTTTTTCTCTAGTCTTTTCTCATCAGCTCCTTCAGCAGCACCAAGCCCTTCACCCTAA

Protein Sequence

Location information (JBrowse)

Scaffold	Start	End	Strand
Scaffold00147	48093	49809	+

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID
--	--	--	--	--

Gene Ontology

molecular_function
GO:0016788 hydrolase activity, acting on ester bonds

Pfam domain

Protein	Pfam accession	Pfam name	Alignment start	Alignment end	E-value
Glyur000147s00013835.1	PF00657.17	Lipase_GDSL	31	338	1.20E-34

Expression pattern

SRP053019

SRA Experiment	Description	TPM
SRR1783599	control	30.692
SRR1783600	control	31.217
SRR1783602	moderate drought stress	30.858
SRR1811619	moderate drought stress	30.925

DRP000996

SRA Experiment	Description	TPM
DRR006519	Root Summer glycyrrhizin high producing strain	2.974
DRR006520	Root Summer glycyrrhizin high producing strain	2.530
DRR006521	Root Winter glycyrrhizin high producing strain	1.533
DRR006522	Root Winter glycyrrhizin high producing strain	1.412
DRR006523	Root Summer glycyrrhizin low producing strain	2.190
DRR006524	Root Summer glycyrrhizin low producing strain	1.745
DRR006525	Leaf Summer glycyrrhizin high producing strain	2.911
DRR006526	Leaf Summer glycyrrhizin high producing strain	2.532

SRP065514

SRA Experiment	Description	TPM
SRR2867873	Salt Stress (root)	52.873
SRR2868004	Drought Stress (root)	30.981
SRR2967015	Control (root)	23.519

SRP215420

SRA Experiment	Description	TPM
SRR9715738	Leaf	0.872
SRR9715740	Leaf	1.433
SRR9715741	Leaf	1.152
SRR9715739	Root	2.880
SRR9715742	Root	4.645
SRR9715743	Root	4.391

SRP188776

SRA Experiment	Description	TPM
SRR8749027	MeJA induced 9h	3.827
SRR8749028	MeJA induced 9h	1.595
SRR8749029	MeJA induced 9h	1.254
SRR8749030	Uninduced	3.020
SRR8749031	Uninduced	4.450
SRR8749032	Uninduced	3.410

SRP175571

SRA Experiment	Description	TPM
SRR8400026	NaCl treatment - Root	132.075
SRR8400027	Control - Root	128.044