Gene detail

Gene detail information of Glyur000147s00013828

Functional Annotation

Database	Orthologs	E value	Annotation
TAIR	AT1G14900.1	2.00E-18	high mobility group A
NR	BAA11766.1	1.71E-77	high mobility group protein [Canavalia gladiata]
Swissprot	tr\|Q00423\|HMGYA_SOYBN	1.00E-69	HMG-Y-related protein A
trEMBL	tr\|Q42461\|Q42461_CANGL	6.00E-78	High mobility group protein {ECO:0000313\|EMBL:BAA13133.1}

Sequence

Transcript Sequence

>Glyur000147s00013828.1
CGTCCACATTCTGGCAAAGATGAACAAGAGAGGTTGGGAAAAGGGATAGGAGTTTACTTATTTTTATAAAAATTTAATTTCTTTTCAATCTTTTAATTTATTTATCTTCCTTTAAATTCAATCCTCAGATCTTTGCAAGTGTCACCCATATCAAATACTCCACTTTTTCTTCTTGCAAAAAATTTTGAAGCCTGCCTCTGTTAAAGTTTGTAAATTTTTTTGGTGGGGGNGTGGTGAGGGAACTGTGCAAGTTTTGGAGCTTAGTCACCACCAACTGCAACTTCAATGGCCACTGAAGAGGTTACTAAGCCTCCATCACTTCCTCCATACCCTGAGATGATAATGAAAGCACTGGAAGCTCTGAATGAACCAAATGGATCTAACAAGTCAGCTATATCAAAGTACANAGAATCGACATATGGTGAGTTGCTGCCAGAGGGTCACTCAGTTTTTCTCTCTGATTACCTCAACAGGATGAAAGACNGTGGTGAGCTTGTGTTCTTCAAGAACAACTACATGAAGCCTGACCCAAATGCCCCACCAAAGAGAGGCCGTGGCAGGCCACCAAAACCAAAGGCACCTTTGCCACCAGGCACTGTTTTGTCCCCACCAAGGCCAAGGGGTAGACCCCCAAAAGACCCAAATGCCCCACCAAAGCCTAAGGTGGTGTCAACTGGGACTGGGAGTGGCAGGCCTAGAGGCCGGCCCAAGAAAATTGCTCGGTCTTCTGCTGTGGCAGCGGCAACTAGAGCTGCCGCTGNCCCTAGCGGGAGACCAAGAGGTAGGCCTCCTAAGGTGAAGCCTCAATTGACAGAAGTGAGTGTTGAATCATAGAGTAATTAAGAGCATAAAAGTAGTGATGAACATGTAGAAGTGGGGTGTGGTCTTTGTTAGATGTTTGTGTCAATGTAATTTGCTTTGTAAAATNATGATGTAGTTGGTTAGTTAGTTTAATATTATGAAGAGGCTTTGTTGGTGTTTTTTTCTAATTGTCAAAGAGGACAGTGACTTG

Protein Sequence

Location information (JBrowse)

Scaffold	Start	End	Strand
Scaffold00147	14643	15989	+

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID
--	--	--	--	--

Gene Ontology

biological_process

GO:0006334 nucleosome assembly

GO:0006355 regulation of transcription, DNA-templated

cellular_component

GO:0000785 chromatin

GO:0000786 nucleosome

GO:0005634 nucleus

molecular_function
GO:0003677 DNA binding

Pfam domain

Protein	Pfam accession	Pfam name	Alignment start	Alignment end	E-value
Glyur000147s00013828.1	PF00538.14	Linker_histone	12	78	2.80E-15
Glyur000147s00013828.1	PF02178.14	AT_hook	87	95	8.9
Glyur000147s00013828.1	PF02178.14	AT_hook	109	120	0.095
Glyur000147s00013828.1	PF02178.14	AT_hook	135	145	0.58
Glyur000147s00013828.1	PF02178.14	AT_hook	162	173	0.29

Expression pattern

SRP053019

SRA Experiment	Description	TPM
SRR1783599	control	36.365
SRR1783600	control	36.814
SRR1783602	moderate drought stress	67.107
SRR1811619	moderate drought stress	66.504

DRP000996

SRA Experiment	Description	TPM
DRR006519	Root Summer glycyrrhizin high producing strain	44.343
DRR006520	Root Summer glycyrrhizin high producing strain	43.963
DRR006521	Root Winter glycyrrhizin high producing strain	36.785
DRR006522	Root Winter glycyrrhizin high producing strain	34.734
DRR006523	Root Summer glycyrrhizin low producing strain	65.455
DRR006524	Root Summer glycyrrhizin low producing strain	64.380
DRR006525	Leaf Summer glycyrrhizin high producing strain	11.183
DRR006526	Leaf Summer glycyrrhizin high producing strain	11.522

SRP065514

SRA Experiment	Description	TPM
SRR2867873	Salt Stress (root)	122.062
SRR2868004	Drought Stress (root)	106.029
SRR2967015	Control (root)	138.441

SRP215420

SRA Experiment	Description	TPM
SRR9715738	Leaf	36.511
SRR9715740	Leaf	15.897
SRR9715741	Leaf	20.367
SRR9715739	Root	65.316
SRR9715742	Root	44.920
SRR9715743	Root	51.667

SRP188776

SRA Experiment	Description	TPM
SRR8749027	MeJA induced 9h	128.520
SRR8749028	MeJA induced 9h	90.783
SRR8749029	MeJA induced 9h	142.199
SRR8749030	Uninduced	38.802
SRR8749031	Uninduced	18.407
SRR8749032	Uninduced	30.173

SRP175571

SRA Experiment	Description	TPM
SRR8400026	NaCl treatment - Root	78.917
SRR8400027	Control - Root	71.797