Gene detail information of Glyur000147s00013827 |
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| TAIR | AT5G16720.1 | 2.00E-60 | Protein of unknown function, DUF593 |
| NR | XP_003616291.1 | 0 | hypothetical protein MTR_5g078300 [Medicago truncatula] |
| trEMBL | tr|G7K1Q1|G7K1Q1_MEDTR | 0 | Zein-binding protein {ECO:0000313|EMBL:AES99249.1} |
Sequence
| Transcript Sequence |
|---|
| Protein Sequence |
|---|
Location information (JBrowse)
| Scaffold | Start | End | Strand |
|---|---|---|---|
| Scaffold00147 | 5227 | 9071 | + |
Gene family
| Gene family | subfamily |
|---|---|
| -- | -- |
KEGG pathway
| KO | Enzyme | Enzyme ID | pathway | mapID |
|---|---|---|---|---|
| -- | -- | -- | -- | -- |
Gene Ontology
| Not hits found. |
Pfam domain
| Protein | Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|---|
| Glyur000147s00013827.1 | PF04576.10 | Zein-binding | 635 | 727 | 7.80E-33 |
Expression pattern
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR1783599 | control | 8.002 |
| SRR1783600 | control | 8.017 |
| SRR1783602 | moderate drought stress | 6.662 |
| SRR1811619 | moderate drought stress | 6.694 |
| SRA Experiment | Description | TPM |
|---|---|---|
| DRR006519 | Root Summer glycyrrhizin high producing strain | 7.272 |
| DRR006520 | Root Summer glycyrrhizin high producing strain | 7.345 |
| DRR006521 | Root Winter glycyrrhizin high producing strain | 0.228 |
| DRR006522 | Root Winter glycyrrhizin high producing strain | 0.255 |
| DRR006523 | Root Summer glycyrrhizin low producing strain | 5.964 |
| DRR006524 | Root Summer glycyrrhizin low producing strain | 5.924 |
| DRR006525 | Leaf Summer glycyrrhizin high producing strain | 1.604 |
| DRR006526 | Leaf Summer glycyrrhizin high producing strain | 1.623 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR2867873 | Salt Stress (root) | 11.351 |
| SRR2868004 | Drought Stress (root) | 7.501 |
| SRR2967015 | Control (root) | 13.860 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR9715738 | Leaf | 1.204 |
| SRR9715740 | Leaf | 0.292 |
| SRR9715741 | Leaf | 0.424 |
| SRR9715739 | Root | 0.145 |
| SRR9715742 | Root | 1.051 |
| SRR9715743 | Root | 1.216 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8749027 | MeJA induced 9h | 0.083 |
| SRR8749028 | MeJA induced 9h | 0.020 |
| SRR8749029 | MeJA induced 9h | 0.000 |
| SRR8749030 | Uninduced | 0.000 |
| SRR8749031 | Uninduced | 0.000 |
| SRR8749032 | Uninduced | 0.025 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8400026 | NaCl treatment - Root | 10.121 |
| SRR8400027 | Control - Root | 12.123 |