Gene detail information of Glyur000146s00016317 |
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| TAIR | AT3G25410.1 | 2.00E-72 | Sodium Bile acid symporter family |
| NR | XP_004492253.1 | 2.46E-104 | PREDICTED: probable sodium/metabolite cotransporter BASS3, chloroplastic-like [Cicer arietinum] |
| COG | YP_005439829.1 | 7.00E-27 | putative sodium-dependent transporter [Selenomonas ruminantium subsp. lactilytica TAM6421] |
| Swissprot | tr|Q8RXE8|BASS3_ARATH | 2.00E-97 | Probable sodium/metabolite cotransporter BASS3, chloroplastic (Precursor) |
| trEMBL | tr|I1KYY7|I1KYY7_SOYBN | 2.00E-105 | Uncharacterized protein {ECO:0000313|EnsemblPlants:GLYMA08G45790.2} |
Sequence
| Transcript Sequence |
|---|
| Protein Sequence |
|---|
Location information (JBrowse)
| Scaffold | Start | End | Strand |
|---|---|---|---|
| Scaffold00146 | 283329 | 284997 | - |
Gene family
| Gene family | subfamily |
|---|---|
| -- | -- |
KEGG pathway
| KO | Enzyme | Enzyme ID | pathway | mapID |
|---|---|---|---|---|
| -- | -- | -- | -- | -- |
Gene Ontology
|
Pfam domain
| Protein | Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|---|
| Glyur000146s00016317.1 | PF01758.11 | SBF | 21 | 194 | 1.60E-32 |
Expression pattern
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR1783599 | control | 0.879 |
| SRR1783600 | control | 1.084 |
| SRR1783602 | moderate drought stress | 1.064 |
| SRR1811619 | moderate drought stress | 1.074 |
| SRA Experiment | Description | TPM |
|---|---|---|
| DRR006519 | Root Summer glycyrrhizin high producing strain | 1.167 |
| DRR006520 | Root Summer glycyrrhizin high producing strain | 1.293 |
| DRR006521 | Root Winter glycyrrhizin high producing strain | 0.787 |
| DRR006522 | Root Winter glycyrrhizin high producing strain | 1.231 |
| DRR006523 | Root Summer glycyrrhizin low producing strain | 2.578 |
| DRR006524 | Root Summer glycyrrhizin low producing strain | 3.257 |
| DRR006525 | Leaf Summer glycyrrhizin high producing strain | 10.100 |
| DRR006526 | Leaf Summer glycyrrhizin high producing strain | 8.658 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR2867873 | Salt Stress (root) | 0.513 |
| SRR2868004 | Drought Stress (root) | 0.328 |
| SRR2967015 | Control (root) | 1.202 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR9715738 | Leaf | 0.636 |
| SRR9715740 | Leaf | 16.811 |
| SRR9715741 | Leaf | 0.940 |
| SRR9715739 | Root | 1.719 |
| SRR9715742 | Root | 0.110 |
| SRR9715743 | Root | 0.236 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8749027 | MeJA induced 9h | 0.151 |
| SRR8749028 | MeJA induced 9h | 0.242 |
| SRR8749029 | MeJA induced 9h | 0.171 |
| SRR8749030 | Uninduced | 0.203 |
| SRR8749031 | Uninduced | 0.000 |
| SRR8749032 | Uninduced | 0.177 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8400026 | NaCl treatment - Root | 0.783 |
| SRR8400027 | Control - Root | 1.061 |