Gene detail

Gene detail information of Glyur000146s00016315

Functional Annotation

Database	Orthologs	E value	Annotation
TAIR	AT3G25410.1	9.00E-60	Sodium Bile acid symporter family
NR	CDP03966.1	3.18E-107	unnamed protein product [Coffea canephora]
COG	YP_001820971.1	2.00E-24	bile acid:sodium symporter [Opitutus terrae PB90-1]
Swissprot	tr\|Q8RXE8\|BASS3_ARATH	1.00E-76	Probable sodium/metabolite cotransporter BASS3, chloroplastic (Precursor)
trEMBL	tr\|A0A068U628\|A0A068U628_COFCA	1.00E-107	Coffea canephora DH200=94 genomic scaffold, scaffold_11 {ECO:0000313\|EMBL:CDP03966.1}

Sequence

Transcript Sequence

>Glyur000146s00016315.1
CAACCATGTAATTGCTGAAGTGCACCATCNTTCTCAACACCGAACTGTCATATTATATGCGAATCTCATTTATAAATCCTCATCTCCTTCTCACGTTCTCACTGCTCCTCAAAAATCATATCTTTCTCGCTCTCTATCCCTCTAACTTCGCCGGCGACGCCGAACGGTCATCGCCGGCGTCACCCCACTTAGTTATTCACTNGCCGGAATTCACCGTTCCTCTTCTATGGCCTCAATCCCCGTTCTTTCTCCCATAACTCACACCAAGCCAAAGCATAAAGCTTTAGCCTTTGAACCACCCCACTTGTGCTCTCGCGCTTGGTTTTCGAACTCGAGGATTCAAAGGGTCTCAAAGGGTGGTGGCGCCGTGTCGAGTTTCTCGTGCTCCACTTCAAAAAAATTCGATGGGTTCAGCCGCAGCAGAAGAAGACAGGAGAAGTTTTCTTCGTTTGGGGTTGATGAAGGTGCTGTTGTTGAAGTGGGTGAAAGGGATTGGTCTCAGGTTTTGTCTGCATCGCTTCCTTTTGTTGTTGCTGCCACTGCTGTTGTTGCTCTTGCTCAACCTTCCACTTTTACTTGGGTATCTAAAGAGTTATATGCCCCGGCTCTTGGTGGGATTATGTTGTCGATTGGAATAAGACTATCCGTAGATGATTTCACTCTTGCATTCAAAAGGCCTTTGCCACTTTCCCTTGGTTTCATTGCGCAATATGTGCTGAAACCTGCTCTTGGGGTCTTCATTGCAAAGGCTTTTGGCTTGCCTAGAATGTTTTATGCAGGCTTTGTCCTCACAGCTTGTGTTTCAGGGGCTCAGCTATCCAGCTATGCAAACCTTATAGGCAAAGGGGATGTAGCCCTAGGCATTCTTCTTACAAGCTATACCACCATTGCATCAGTTATTGTTACNCCTTTACTATCTGGTCTTCTGATTGGTTCTGTAGTGCCAGTTGATGCAGTTGCCATGTCAAATTGTGTCTATTCTTCGACAAGTGATGCCCTTTGTTGCTATGATTTGTACATCATTGTGCATTGGCAGCCCTCTTGCTATAAACCGGAGTCAAATNTTGTCAGGCGAAGGTCTCCGATTGGTTCTTCCAGTATTGACATTTCATGCTGCTGCCTTCACAGTAGGATATTGGTTCTCAAACCTTCCTTCCTTGAGAGCTCCACCCTTGCAGGCCTTCTTGCCACCCAATTTTTGGGAAGTAGTCAGGCGGTTCCTCCCGCGTGTTCTGTCGTTGCCATGGCTATAATGGGTCTCTGTCTTGCCTCTTTTTGGGGAAGGGGATTTGAAATTGGCAACCTTCTGTCATTACCTCCATTCAGAACCAATTCTGCC

Protein Sequence

Location information (JBrowse)

Scaffold	Start	End	Strand
Scaffold00146	276274	286604	+

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID
--	--	--	--	--

Gene Ontology

cellular_component
GO:0016020 membrane

Pfam domain

Protein	Pfam accession	Pfam name	Alignment start	Alignment end	E-value
Glyur000146s00016315.1	PF01758.11	SBF	126	246	2.20E-24

Expression pattern

SRP053019

SRA Experiment	Description	TPM
SRR1783599	control	3.292
SRR1783600	control	3.468
SRR1783602	moderate drought stress	3.983
SRR1811619	moderate drought stress	4.025

DRP000996

SRA Experiment	Description	TPM
DRR006519	Root Summer glycyrrhizin high producing strain	6.517
DRR006520	Root Summer glycyrrhizin high producing strain	6.301
DRR006521	Root Winter glycyrrhizin high producing strain	3.276
DRR006522	Root Winter glycyrrhizin high producing strain	3.301
DRR006523	Root Summer glycyrrhizin low producing strain	5.570
DRR006524	Root Summer glycyrrhizin low producing strain	5.568
DRR006525	Leaf Summer glycyrrhizin high producing strain	37.174
DRR006526	Leaf Summer glycyrrhizin high producing strain	37.614

SRP065514

SRA Experiment	Description	TPM
SRR2867873	Salt Stress (root)	2.609
SRR2868004	Drought Stress (root)	4.586
SRR2967015	Control (root)	5.303

SRP215420

SRA Experiment	Description	TPM
SRR9715738	Leaf	23.032
SRR9715740	Leaf	34.681
SRR9715741	Leaf	34.212
SRR9715739	Root	1.811
SRR9715742	Root	2.769
SRR9715743	Root	2.562

SRP188776

SRA Experiment	Description	TPM
SRR8749027	MeJA induced 9h	2.422
SRR8749028	MeJA induced 9h	2.717
SRR8749029	MeJA induced 9h	1.728
SRR8749030	Uninduced	1.353
SRR8749031	Uninduced	0.481
SRR8749032	Uninduced	1.393

SRP175571

SRA Experiment	Description	TPM
SRR8400026	NaCl treatment - Root	4.277
SRR8400027	Control - Root	5.405