Gene detail information of Glyur000146s00016311 |
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| TAIR | AT5G48460.1 | 0 | Actin binding Calponin homology (CH) domain-containing protein |
| NR | XP_003532244.1 | 0 | PREDICTED: fimbrin-1-like [Glycine max] |
| Swissprot | tr|O50064|FIMB2_ARATH | 0 | Fimbrin-2 {ECO:0000305} |
| trEMBL | tr|I1KYY8|I1KYY8_SOYBN | 0 | Uncharacterized protein {ECO:0000313|EnsemblPlants:GLYMA08G45800.1} |
Sequence
| Transcript Sequence |
|---|
| Protein Sequence |
|---|
Location information (JBrowse)
| Scaffold | Start | End | Strand |
|---|---|---|---|
| Scaffold00146 | 220374 | 228013 | - |
Gene family
| Gene family | subfamily |
|---|---|
| -- | -- |
KEGG pathway
| KO | Enzyme | Enzyme ID | pathway | mapID |
|---|---|---|---|---|
| -- | -- | -- | -- | -- |
Gene Ontology
|
Pfam domain
| Protein | Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|---|
| Glyur000146s00016311.1 | PF00307.26 | CH | 133 | 239 | 3.70E-14 |
| Glyur000146s00016311.1 | PF00307.26 | CH | 275 | 355 | 4.10E-10 |
| Glyur000146s00016311.1 | PF00307.26 | CH | 382 | 458 | 1.70E-09 |
| Glyur000146s00016311.1 | PF00307.26 | CH | 483 | 585 | 1.60E-17 |
Expression pattern
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR1783599 | control | 10.575 |
| SRR1783600 | control | 10.332 |
| SRR1783602 | moderate drought stress | 10.256 |
| SRR1811619 | moderate drought stress | 10.173 |
| SRA Experiment | Description | TPM |
|---|---|---|
| DRR006519 | Root Summer glycyrrhizin high producing strain | 22.943 |
| DRR006520 | Root Summer glycyrrhizin high producing strain | 23.331 |
| DRR006521 | Root Winter glycyrrhizin high producing strain | 4.192 |
| DRR006522 | Root Winter glycyrrhizin high producing strain | 3.863 |
| DRR006523 | Root Summer glycyrrhizin low producing strain | 11.713 |
| DRR006524 | Root Summer glycyrrhizin low producing strain | 11.390 |
| DRR006525 | Leaf Summer glycyrrhizin high producing strain | 8.771 |
| DRR006526 | Leaf Summer glycyrrhizin high producing strain | 8.915 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR2867873 | Salt Stress (root) | 10.918 |
| SRR2868004 | Drought Stress (root) | 10.225 |
| SRR2967015 | Control (root) | 9.700 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR9715738 | Leaf | 8.642 |
| SRR9715740 | Leaf | 5.446 |
| SRR9715741 | Leaf | 8.521 |
| SRR9715739 | Root | 0.537 |
| SRR9715742 | Root | 4.135 |
| SRR9715743 | Root | 3.405 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8749027 | MeJA induced 9h | 2.128 |
| SRR8749028 | MeJA induced 9h | 3.926 |
| SRR8749029 | MeJA induced 9h | 1.865 |
| SRR8749030 | Uninduced | 0.357 |
| SRR8749031 | Uninduced | 0.032 |
| SRR8749032 | Uninduced | 0.146 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8400026 | NaCl treatment - Root | 19.762 |
| SRR8400027 | Control - Root | 23.084 |