Gene detail

Gene detail information of Glyur000146s00016297.1

Functional Annotation

Database	Orthologs	E value	Annotation
TAIR	AT1G18650.1	4.00E-27	plasmodesmata callose-binding protein 3
NR	XP_007157837.1	4.44E-68	hypothetical protein PHAVU_002G102400g [Phaseolus vulgaris]
Swissprot	tr\|Q9FZ86\|PDCB3_ARATH	7.00E-41	PLASMODESMATA CALLOSE-BINDING PROTEIN 3 (Precursor)
trEMBL	tr\|V7CLQ5\|V7CLQ5_PHAVU	2.00E-68	Uncharacterized protein {ECO:0000313\|EMBL:ESW29831.1}

Sequence

Transcript Sequence

>Glyur000146s00016297.1
TTGAAAAGCGTACCAGACACAGCCCCCCCACCACCCTTCCCCCTCCCTCATCTTTTTGTCCAGAAAAATCTCCATTCTCCAAGCTCCTTCTTCTCATTTATCTCTCTCTCTCTCTCTCTTTTTCTTTCTGCCACAGAGCGCAGTACCCTCCTCAAGTTGAACCAACTTTTCATCAAATAGATTTCTCTTATACCAGCTGAATACACATCTTCATCATTAATCATGGCTCTTCTGGTGTATTTTGTGCTTTTCCTTGCCCTTACTNGCCATTCAAGGGGTGCTCTTTACTGTGTATGTAAAGATGGTGTGGGTGATCAATNTCTCCAGAAGGCAATAGATTATGCTTGTGGTGCTGGAGCTGATTGTACCCCTATTGCCCAAAATGGAGCCTGTTACAACCCCAACACTGTGAAGGATCACTGCAACTATGCTGTTAATAGCTATTTCCAGAAAAAGGGTCAAGCTCAGGGAAGCTGTGATTTTGCTGGTNCTGCCACAACCAGTCCAACTCCACCTTCTACTGCATCATCTTCATGTTCTTTCCCGTCAAGTTCTAGCAATACAGGAACAGGAACAGGTAGCACCACAACCCCAACACCCAATACACCAGGCATGTCACCACCTTCCACCATAACACCAACCACTCCTACAACTCCAGGCACAGGCACAGGCACAGGCACAGGCACACCCACCACAGGAACAGGAACAGGAACAGGCACACCCACCACAGGCACAGGAACTGGCACAGGCATGGGCACAGGAACAGGTACAGGAACTGGCACAGGCACAACCACAGGAAATCCTAATGTTTTTGGAATAAGTCCAACATCTTCAACTGGCACTGGTGGCTTCAATGACTCTAGCAATGGTGTGGTTCATTTGAAAGACACTTTTATGTTACTCTTATCTCTTCTTACCTTATGGCTAGTGGTAAGGGACTAAATAATAGTACAGTACTGCTACTGCTAGGTGGTAGAACTTTGTGGGGAGGTTTGATATATGGATGAGATTTTGCCACCACATGATGGGGGGTGTTCACGTAATTTCATCACTTGGTATCATCCAGAAGCAAAACCCCACTTCGGCTTTATTGTATTTTGTTGTTGGTTTTTTTTTGTTCTCCTATGTGCAAAGGGGAAAAGAAAAAAGCTAAGGGAATTTGGTTCCTTTTTNGTGGTGAATATATTTGATGGCTACTACTAATGGAGTAATGGGAGTCTAGAACATGGTCAATTTCCTTTTGTATATTAACTATTATCTATATCACTATGAGAG

Protein Sequence

Location information (JBrowse)

Scaffold	Start	End	Strand
Scaffold00146	131527	133854	-

Gene family

Gene family	subfamily
Carbohydrate-Active enzymes Family	CBM43

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID
--	--	--	--	--

Gene Ontology

Not hits found.

Not hits found.

Pfam domain

Protein	Pfam accession	Pfam name	Alignment start	Alignment end	E-value
Glyur000146s00016297.1	PF07983.8	X8	22	92	5.60E-17

Expression pattern

SRP053019

SRA Experiment	Description	TPM
SRR1783599	control	122.813
SRR1783600	control	122.464
SRR1783602	moderate drought stress	190.923
SRR1811619	moderate drought stress	193.638

DRP000996

SRA Experiment	Description	TPM
DRR006519	Root Summer glycyrrhizin high producing strain	166.762
DRR006520	Root Summer glycyrrhizin high producing strain	161.121
DRR006521	Root Winter glycyrrhizin high producing strain	84.671
DRR006522	Root Winter glycyrrhizin high producing strain	83.889
DRR006523	Root Summer glycyrrhizin low producing strain	113.908
DRR006524	Root Summer glycyrrhizin low producing strain	110.977
DRR006525	Leaf Summer glycyrrhizin high producing strain	47.163
DRR006526	Leaf Summer glycyrrhizin high producing strain	48.572

SRP065514

SRA Experiment	Description	TPM
SRR2867873	Salt Stress (root)	87.134
SRR2868004	Drought Stress (root)	52.044
SRR2967015	Control (root)	61.828

SRP215420

SRA Experiment	Description	TPM
SRR9715738	Leaf	32.742
SRR9715740	Leaf	37.959
SRR9715741	Leaf	24.147
SRR9715739	Root	100.087
SRR9715742	Root	64.014
SRR9715743	Root	66.487

SRP188776

SRA Experiment	Description	TPM
SRR8749027	MeJA induced 9h	130.980
SRR8749028	MeJA induced 9h	44.016
SRR8749029	MeJA induced 9h	67.762
SRR8749030	Uninduced	9.457
SRR8749031	Uninduced	4.865
SRR8749032	Uninduced	7.229

SRP175571

SRA Experiment	Description	TPM
SRR8400026	NaCl treatment - Root	117.307
SRR8400027	Control - Root	110.382