Gene detail

Gene detail information of Glyur000146s00016296

Functional Annotation

Database	Orthologs	E value	Annotation
TAIR	AT1G13820.1	3.00E-128	alpha/beta-Hydrolases superfamily protein
NR	XP_003614082.1	0	2-hydroxy-6-oxo-6-phenylhexa-2,4-dienoate hydrolase [Medicago truncatula]
COG	YP_001866223.1	3.00E-59	alpha/beta hydrolase fold protein [Nostoc punctiforme PCC 73102]
trEMBL	tr\|G7JWW5\|G7JWW5_MEDTR	0	Alpha/beta fold hydrolase {ECO:0000313\|EMBL:AES97040.1}

Sequence

Transcript Sequence

>Glyur000146s00016296.1
ATGGTTCTTTCTCAGCCACTGGGTTGTTCTGCTTCTTCTTCTACCGCATTACCCCTCAAATGCTGCAGCGTGAAACTGAGGCCATTCAAGGTTCTCGCTAATAATGNGTTCCCTCCCTTTCTTCCCAGAGAAATCCACAAAATCCAAGACCCCTTTGCTCGGAAATTCGCCATGCGGATTCAGAGACTACCCGTCCCTGTTAGCTTCTCAGACAATCCCATCATGAGCAGTTGTGTGAAGCCACTGGTGCAGAGCAAGGAACCTCCAGTTGTTCTTCTACATGGTTTCGATAGTTCATGTTTAGAATGGAGATATGGGTATCCATTGCTTGAAGAAGCTGGCTTTGAAACCTGGGCAGTTGACATTCTTGGTTGGGGTTTCTGTGATTTAGAAAAACTTCAACCTTGTGATGTGGTATCAAAGCGCAACCACTTCTATCAGTTTTGGAAGTCCTACATCAGAAGGCCAATGATATTGGTTGGACCAAGCCTTGGCTCTGCTGTTGCCATTGACTTTGCTGTCAATTATCCAGAAGCTGTGGAAAAGCTTGTTTTGATGGATGCTAGTGTATATGCAGAGGGAACCGGAATCCTAGCAACCTTACCTAGAGCGGTATATTTATTGAAGAGCATTCCATTACGCTTATATGCCAACTATTTGACCTTCACTAACTTGTCCTTACGCACCAGCCTTGATTCGACTAATGTGGGCCGCTTGCATTGTTTATTGCCTTGGTGGGATGATGCTACTGTGGATTTTATGACTAGTGGCGGTTACAATGTTGCTTCCCTGATAAGAAAGGTAAAGCAGAAAACACTGATAATATGGGGTGAAAATGACCGCATCATCAGCAATAAGTTTGCCGTGCAACTACACTGTGAATTACCTGATGCAATTATACGCCAAGTACCCAATTGTGGGCATCTCCCTCATTTGGAAAGACCTGATTCTACTATCAAATTAATTGTTGAATTTGTGCAGAGAGAGGCCAAGAAATTAGATCAATCTGTTTCNCAAGTATGA

Protein Sequence

Location information (JBrowse)

Scaffold	Start	End	Strand
Scaffold00146	121642	126446	+

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID
--	--	--	--	--

Gene Ontology

molecular_function
GO:0003824 catalytic activity

Pfam domain

Protein	Pfam accession	Pfam name	Alignment start	Alignment end	E-value
Glyur000146s00016296.1	PF12697.2	Abhydrolase_6	90	318	9.00E-31

Expression pattern

SRP053019

SRA Experiment	Description	TPM
SRR1783599	control	2.609
SRR1783600	control	2.817
SRR1783602	moderate drought stress	2.971
SRR1811619	moderate drought stress	3.055

DRP000996

SRA Experiment	Description	TPM
DRR006519	Root Summer glycyrrhizin high producing strain	0.657
DRR006520	Root Summer glycyrrhizin high producing strain	0.924
DRR006521	Root Winter glycyrrhizin high producing strain	0.703
DRR006522	Root Winter glycyrrhizin high producing strain	0.667
DRR006523	Root Summer glycyrrhizin low producing strain	0.584
DRR006524	Root Summer glycyrrhizin low producing strain	0.494
DRR006525	Leaf Summer glycyrrhizin high producing strain	2.065
DRR006526	Leaf Summer glycyrrhizin high producing strain	2.028

SRP065514

SRA Experiment	Description	TPM
SRR2867873	Salt Stress (root)	2.884
SRR2868004	Drought Stress (root)	2.368
SRR2967015	Control (root)	1.590

SRP215420

SRA Experiment	Description	TPM
SRR9715738	Leaf	1.489
SRR9715740	Leaf	0.291
SRR9715741	Leaf	0.790
SRR9715739	Root	1.060
SRR9715742	Root	0.984
SRR9715743	Root	1.602

SRP188776

SRA Experiment	Description	TPM
SRR8749027	MeJA induced 9h	8.162
SRR8749028	MeJA induced 9h	12.926
SRR8749029	MeJA induced 9h	8.279
SRR8749030	Uninduced	7.706
SRR8749031	Uninduced	2.918
SRR8749032	Uninduced	0.865

SRP175571

SRA Experiment	Description	TPM
SRR8400026	NaCl treatment - Root	4.104
SRR8400027	Control - Root	3.577