Gene detail information of Glyur000146s00016286 |
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| TAIR | AT5G50280.1 | 0 | Pentatricopeptide repeat (PPR) superfamily protein |
| NR | XP_004490192.1 | 0 | PREDICTED: pentatricopeptide repeat-containing protein At5g50280, chloroplastic-like [Cicer arietinum] |
| Swissprot | tr|Q9FGR7|PP426_ARATH | 0 | Pentatricopeptide repeat-containing protein At5g50280, chloroplastic (Precursor) |
| trEMBL | tr|I1LPX7|I1LPX7_SOYBN | 0 | Uncharacterized protein {ECO:0000313|EnsemblPlants:GLYMA12G04160.1} |
Sequence
| Transcript Sequence |
|---|
| Protein Sequence |
|---|
Location information (JBrowse)
| Scaffold | Start | End | Strand |
|---|---|---|---|
| Scaffold00146 | 63283 | 66579 | - |
Gene family
| Gene family | subfamily |
|---|---|
| -- | -- |
KEGG pathway
| KO | Enzyme | Enzyme ID | pathway | mapID |
|---|---|---|---|---|
| -- | -- | -- | -- | -- |
Gene Ontology
|
Pfam domain
| Protein | Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|---|
| Glyur000146s00016286.1 | PF13041.1 | PPR_2 | 248 | 291 | 2.70E-12 |
| Glyur000146s00016286.1 | PF01535.15 | PPR | 323 | 349 | 0.0058 |
| Glyur000146s00016286.1 | PF13041.1 | PPR_2 | 352 | 399 | 1.20E-16 |
| Glyur000146s00016286.1 | PF13041.1 | PPR_2 | 422 | 469 | 4.90E-09 |
| Glyur000146s00016286.1 | PF13812.1 | PPR_3 | 495 | 525 | 0.0018 |
| Glyur000146s00016286.1 | PF01535.15 | PPR | 530 | 555 | 0.00079 |
| Glyur000146s00016286.1 | PF13041.1 | PPR_2 | 562 | 610 | 1.30E-12 |
Expression pattern
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR1783599 | control | 4.003 |
| SRR1783600 | control | 3.949 |
| SRR1783602 | moderate drought stress | 4.180 |
| SRR1811619 | moderate drought stress | 3.947 |
| SRA Experiment | Description | TPM |
|---|---|---|
| DRR006519 | Root Summer glycyrrhizin high producing strain | 6.527 |
| DRR006520 | Root Summer glycyrrhizin high producing strain | 6.404 |
| DRR006521 | Root Winter glycyrrhizin high producing strain | 2.522 |
| DRR006522 | Root Winter glycyrrhizin high producing strain | 2.541 |
| DRR006523 | Root Summer glycyrrhizin low producing strain | 4.576 |
| DRR006524 | Root Summer glycyrrhizin low producing strain | 4.520 |
| DRR006525 | Leaf Summer glycyrrhizin high producing strain | 4.673 |
| DRR006526 | Leaf Summer glycyrrhizin high producing strain | 4.898 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR2867873 | Salt Stress (root) | 3.381 |
| SRR2868004 | Drought Stress (root) | 3.349 |
| SRR2967015 | Control (root) | 3.152 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR9715738 | Leaf | 4.052 |
| SRR9715740 | Leaf | 5.082 |
| SRR9715741 | Leaf | 4.552 |
| SRR9715739 | Root | 0.719 |
| SRR9715742 | Root | 2.429 |
| SRR9715743 | Root | 2.310 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8749027 | MeJA induced 9h | 3.008 |
| SRR8749028 | MeJA induced 9h | 1.801 |
| SRR8749029 | MeJA induced 9h | 1.137 |
| SRR8749030 | Uninduced | 0.628 |
| SRR8749031 | Uninduced | 0.184 |
| SRR8749032 | Uninduced | 0.288 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8400026 | NaCl treatment - Root | 7.181 |
| SRR8400027 | Control - Root | 7.575 |