Gene detail information of Glyur000145s00010154 |
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| TAIR | AT2G42840.1 | 5.00E-32 | protodermal factor 1 |
| NR | XP_007141386.1 | 5.84E-141 | hypothetical protein PHAVU_008G190900g [Phaseolus vulgaris] |
| Swissprot | tr|Q9S728|PDF1_ARATH | 2.00E-55 | Protodermal factor 1 (Precursor) |
| trEMBL | tr|V7B716|V7B716_PHAVU | 2.00E-141 | Uncharacterized protein {ECO:0000313|EMBL:ESW13380.1} |
Sequence
| Transcript Sequence |
|---|
| Protein Sequence |
|---|
Location information (JBrowse)
| Scaffold | Start | End | Strand |
|---|---|---|---|
| Scaffold00145 | 260249 | 261773 | - |
Gene family
| Gene family | subfamily |
|---|---|
| -- | -- |
KEGG pathway
| KO | Enzyme | Enzyme ID | pathway | mapID |
|---|---|---|---|---|
| -- | -- | -- | -- | -- |
Gene Ontology
| Not hits found. |
Pfam domain
| Protein | Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|---|
| -- | -- | -- | -- | -- | -- |
Expression pattern
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR1783599 | control | 0.124 |
| SRR1783600 | control | 0.147 |
| SRR1783602 | moderate drought stress | 0.093 |
| SRR1811619 | moderate drought stress | 0.064 |
| SRA Experiment | Description | TPM |
|---|---|---|
| DRR006519 | Root Summer glycyrrhizin high producing strain | 0.000 |
| DRR006520 | Root Summer glycyrrhizin high producing strain | 0.000 |
| DRR006521 | Root Winter glycyrrhizin high producing strain | 0.407 |
| DRR006522 | Root Winter glycyrrhizin high producing strain | 0.517 |
| DRR006523 | Root Summer glycyrrhizin low producing strain | 0.166 |
| DRR006524 | Root Summer glycyrrhizin low producing strain | 0.187 |
| DRR006525 | Leaf Summer glycyrrhizin high producing strain | 0.917 |
| DRR006526 | Leaf Summer glycyrrhizin high producing strain | 0.783 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR2867873 | Salt Stress (root) | 0.165 |
| SRR2868004 | Drought Stress (root) | 0.060 |
| SRR2967015 | Control (root) | 0.064 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR9715738 | Leaf | 54.865 |
| SRR9715740 | Leaf | 0.155 |
| SRR9715741 | Leaf | 9.014 |
| SRR9715739 | Root | 0.126 |
| SRR9715742 | Root | 19.874 |
| SRR9715743 | Root | 12.782 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8749027 | MeJA induced 9h | 0.120 |
| SRR8749028 | MeJA induced 9h | 0.082 |
| SRR8749029 | MeJA induced 9h | 0.000 |
| SRR8749030 | Uninduced | 0.075 |
| SRR8749031 | Uninduced | 0.037 |
| SRR8749032 | Uninduced | 0.127 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8400026 | NaCl treatment - Root | 0.265 |
| SRR8400027 | Control - Root | 9.710 |