Gene detail

Gene detail information of Glyur000145s00010150

Functional Annotation

Database	Orthologs	E value	Annotation
TAIR	AT3G58780.1	1.00E-65	K-box region and MADS-box transcription factor family protein
NR	XP_003545122.1	8.99E-123	PREDICTED: agamous-like MADS-box protein AGL5-like isoform X1 [Glycine max]
Swissprot	tr\|P29381\|AGL1_ARATH	1.00E-96	Agamous-like MADS-box protein AGL1
trEMBL	tr\|I1M6W3\|I1M6W3_SOYBN	3.00E-123	Uncharacterized protein {ECO:0000313\|EnsemblPlants:GLYMA14G03100.1}

Sequence

Transcript Sequence

>Glyur000145s00010150.1
GTCAATTTCAAGTCCATAAATATAGCCTGATCAGTGATCAGTAGCTAGCTAGGCCAACCCATCACTTCCATATTTTGCATCCTTTTCTCCAGAGCTGCAGGATATATAACACCAAATAACACGAAAATAGTGCTTATAGCAAAGCAAACGATGGAGTTTGGGATTAATAATATTGAAGGATCAGAAGAAGTAGAAGTGGAAGGGTGGTCCAATAATAATAATAATAGTTGTCAACAACAGATCAGGACGAGAACGGGAAGAGGGAAGATAGAGATAAAGAGGATAGAGAACACAACGAACAGGCAAGTGACGTTCTGCAAGCGACGCAANGGGTTGCTGAAGAAAGCCTACGAACTCTCTGTTCTCTGTGATGCCGAAGTTGCCCTCGTCATCTTCTCCACCCGTGGCCGCCTCTATGAGTATGCCAACAACAGTGTTAGAGGAACTATAGAGAGGTACAAGAANGCATCTGCTGCTTCCACAAATACAGAATCTGTATCTGAAGCTAATACTCAGTTCTATCAGCAGGAATCATCCAAATTAAAAAGACAGATCAGAGAAATTCAGAATCTGAACAGGCACATCCTTGGTGAAGCACTTAGCTCTCTGAGTCTAAAGGAACTAAAGAACCTCGAAAGTAGATTGGAGAAAGGTCTAAGCAGAGTTAGATCTAGAAAGAATGAAGCATTGTTTGCTGATGTTGAGTTCATGCAAAAGCGGATAGCAGAATATGAGAGAGCACAACAACAGGAACCGAATTTGATGGATGGAAATGTGTGCGAGTCCATACCTTCACAAGCATATGATCACAGGAACTTCTTCCCTGTGAATCTCCTAGATTCCAATCATCAATATTCACGTCAAGCTGACCACACTGCTCTCCAACTTGTCTGATAAGCTCGAAAGCCATTGNAAATTCTGCAACATCATTTCATCTATCTGAATAATTGCAAGTGGTGCCTACAATGGGGAGCGATACTTCCCTAAGTTTCCTGAATGAGTGTCTTTAGAGTTTCCTTTACTAGTTTACTA

Protein Sequence

Location information (JBrowse)

Scaffold	Start	End	Strand
Scaffold00145	233448	239740	+

Gene family

Gene family	subfamily
Transcription Factors Family	MIKC

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID
--	--	--	--	--

Gene Ontology

biological_process
GO:0006355 regulation of transcription, DNA-templated

cellular_component
GO:0005634 nucleus

molecular_function

GO:0003677 DNA binding

GO:0003700 transcription factor activity, sequence-specific DNA binding

GO:0046983 protein dimerization activity

Pfam domain

Protein	Pfam accession	Pfam name	Alignment start	Alignment end	E-value
Glyur000145s00010150.1	PF00319.13	SRF-TF	43	92	7.40E-28
Glyur000145s00010150.1	PF01486.12	K-box	111	199	2.00E-26
Glyur000145s00010150.2	PF00319.13	SRF-TF	60	109	8.20E-28
Glyur000145s00010150.2	PF01486.12	K-box	128	216	2.30E-26

Expression pattern

SRP053019

SRA Experiment	Description	TPM
SRR1783599	control	16.725
SRR1783600	control	16.823
SRR1783602	moderate drought stress	13.877
SRR1811619	moderate drought stress	14.210

DRP000996

SRA Experiment	Description	TPM
DRR006519	Root Summer glycyrrhizin high producing strain	25.117
DRR006520	Root Summer glycyrrhizin high producing strain	25.872
DRR006521	Root Winter glycyrrhizin high producing strain	8.393
DRR006522	Root Winter glycyrrhizin high producing strain	8.045
DRR006523	Root Summer glycyrrhizin low producing strain	2.829
DRR006524	Root Summer glycyrrhizin low producing strain	2.985
DRR006525	Leaf Summer glycyrrhizin high producing strain	2.983
DRR006526	Leaf Summer glycyrrhizin high producing strain	2.778

SRP065514

SRA Experiment	Description	TPM
SRR2867873	Salt Stress (root)	0.605
SRR2868004	Drought Stress (root)	0.696
SRR2967015	Control (root)	0.365

SRP215420

SRA Experiment	Description	TPM
SRR9715738	Leaf	2.393
SRR9715740	Leaf	1.004
SRR9715741	Leaf	1.011
SRR9715739	Root	1.827
SRR9715742	Root	2.183
SRR9715743	Root	3.065

SRP188776

SRA Experiment	Description	TPM
SRR8749027	MeJA induced 9h	1.301
SRR8749028	MeJA induced 9h	0.546
SRR8749029	MeJA induced 9h	2.957
SRR8749030	Uninduced	0.084
SRR8749031	Uninduced	0.096
SRR8749032	Uninduced	0.425

SRP175571

SRA Experiment	Description	TPM
SRR8400026	NaCl treatment - Root	5.425
SRR8400027	Control - Root	6.070