Gene detail information of Glyur000145s00010148 |
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| TAIR | AT2G42820.1 | 2.00E-56 | HVA22-like protein F |
| NR | XP_004491348.1 | 6.82E-90 | PREDICTED: HVA22-like protein f-like [Cicer arietinum] |
| Swissprot | tr|Q682H0|HA22F_ARATH | 4.00E-71 | HVA22-like protein f |
| trEMBL | tr|B7FNC9|B7FNC9_MEDTR | 3.00E-90 | Uncharacterized protein {ECO:0000313|EMBL:AFK35027.1} |
Sequence
| Transcript Sequence |
|---|
| Protein Sequence |
|---|
Location information (JBrowse)
| Scaffold | Start | End | Strand |
|---|---|---|---|
| Scaffold00145 | 216635 | 217458 | - |
Gene family
| Gene family | subfamily |
|---|---|
| -- | -- |
KEGG pathway
| KO | Enzyme | Enzyme ID | pathway | mapID |
|---|---|---|---|---|
| -- | -- | -- | -- | -- |
Gene Ontology
| Not hits found. |
Pfam domain
| Protein | Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|---|
| Glyur000145s00010148.1 | PF03134.14 | TB2_DP1_HVA22 | 3 | 84 | 1.00E-29 |
Expression pattern
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR1783599 | control | 1.302 |
| SRR1783600 | control | 1.487 |
| SRR1783602 | moderate drought stress | 1.381 |
| SRR1811619 | moderate drought stress | 1.287 |
| SRA Experiment | Description | TPM |
|---|---|---|
| DRR006519 | Root Summer glycyrrhizin high producing strain | 7.173 |
| DRR006520 | Root Summer glycyrrhizin high producing strain | 6.660 |
| DRR006521 | Root Winter glycyrrhizin high producing strain | 0.000 |
| DRR006522 | Root Winter glycyrrhizin high producing strain | 0.000 |
| DRR006523 | Root Summer glycyrrhizin low producing strain | 8.948 |
| DRR006524 | Root Summer glycyrrhizin low producing strain | 8.630 |
| DRR006525 | Leaf Summer glycyrrhizin high producing strain | 3.303 |
| DRR006526 | Leaf Summer glycyrrhizin high producing strain | 4.093 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR2867873 | Salt Stress (root) | 16.025 |
| SRR2868004 | Drought Stress (root) | 17.936 |
| SRR2967015 | Control (root) | 15.862 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR9715738 | Leaf | 6.913 |
| SRR9715740 | Leaf | 0.284 |
| SRR9715741 | Leaf | 3.322 |
| SRR9715739 | Root | 2.143 |
| SRR9715742 | Root | 8.408 |
| SRR9715743 | Root | 7.499 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8749027 | MeJA induced 9h | 0.000 |
| SRR8749028 | MeJA induced 9h | 0.000 |
| SRR8749029 | MeJA induced 9h | 0.000 |
| SRR8749030 | Uninduced | 0.000 |
| SRR8749031 | Uninduced | 0.146 |
| SRR8749032 | Uninduced | 0.000 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8400026 | NaCl treatment - Root | 5.950 |
| SRR8400027 | Control - Root | 6.941 |