Gene detail

Gene detail information of Glyur000145s00010146.1

Functional Annotation

Database	Orthologs	E value	Annotation
TAIR	AT3G58760.1	3.00E-170	Integrin-linked protein kinase family
NR	XP_004491350.1	0	PREDICTED: serine/threonine-protein kinase TNNI3K-like [Cicer arietinum]
COG	YP_006592168.1	8.00E-24	protein kinase [Methylocystis sp. SC2]
Swissprot	tr\|Q2MHE4\|HT1_ARATH	1.00E-39	Serine/threonine-protein kinase HT1
trEMBL	tr\|G7K3E6\|G7K3E6_MEDTR	0	Integrin-linked kinase family protein {ECO:0000313\|EMBL:AET00424.2}

Sequence

Transcript Sequence

>Glyur000145s00010146.1
CCAAAAAGCTAAAACGCATCCTTATTATCATTCTCACTTCTCCCTTCTTATCCGTTCTTCAACGTAACACTACCAATGCAATACAAAACGACATCACAAACATAACAAGATTCTTCCCCTGTTTTTTCCTTTTATTTTTCCTTNATTTTGGAATCTTCCTCTCTCCATAGTCCAAAACCCTCATTCCCCACTCCTCACTGCAAAACAATTAGGTTTCTCTCTCTGTTTCTCTTTGCGTTTTCGATGGAAACCAAAAAGCTTCAGACTCGGTTCTCGCTGGGCAGGCAATCCTCGCTGGCGCCGGAGAGCGATGATTCCGCCGCCGCCGCCGGGTCGGGAACAGAGACGTTGGACCCGACAGTTCGATTGATGTACCTGGCGAACGAAGGGGACATGGAAGGGATTGAGGAGCTGTTGGACGGAGGGAGCGACGTGAATTTCAGAGACATTGATGGCCGCACCGCTCTCCACGTCGCCGCCTGTCAGCGCCGCACCGATGTNGTCGACTTGTTGCTCCAACGAGGTGCTGAGGTCGACCCTCAAGATCGCTGGGGCAGCACTCCTCTTGCAGATGCATTGTACTACAAAAATCATGACGTTGTCAAACTTTTGGAGAAACACGGTGCAAAACCCCCGGTGGCTCCCATGCATGTCCAAAATGCTCGTGAAGTTCCAGAATATGAGATTGATGCTTCTGAACTTGATTTTACTAATAGTGTTTGTATAACAAAGGGAACTTTCCGGATTGCATTATGGCGTGGAATTCAAGTCGCTGTCAAAACGCTTGGGGAGGAAGTGTTCACTGATGANGAGAAAGTGAAGGCATTTCATGATGAGCTCACATTATTTCAAAAGATAAGGCATCCGAATGTAGTCCAGTTTTTGGGTGCCGTAACACAGAGCACCCCNATGATGATTGTCACGGAATATCTACCCCAGGGGGATCTTCATGCCTACTTGAAGCGGAAAGGTGCATTAAAACCAATAACAGCTGTGAAGTTTGCACTTGATATTGCCAGGGGAATGAACTATTTGCATGAACATAAACCTGAAGCCATTATACACCGAGATCTTGAGCCTTCAAATATACTGCGGGATGATTCTGGGCATCTGAAAGTTGCAGACTTTGGAGTTAGCAAGTCACTCAAAGTTACTAAAACAGTCAAAGAAGACAAACCTGTGACCTGCCAGGATACATCATGGCGGTATGTTGCTCCAGAGGTCTACAGAAATGAGGAATATGACACCAANGTGGATGTGTTTTCATTTGCTCTGATATTACAGGAGATGGTTGAAGGTTGTCCACCGTTTTATAAAAAGCCAGAAAATGAAGTTCCTAAAGCATATGTGGAAAATGAGCGCCCACCATTTAGAGCTTCACCAAAGCTTTATGCTTATGGATTGAAACAGTTAATTGAGGAATGTTGGGATGGAAAACCATACAGAAGGCCAACATTTAGGCAAATTATTGGGAGGTTGGATGACATCAGCCACCATCTTGCTCAAAAGAGGCGCTGGAAGGCTCTGACTCCTACATGCATCCGGAATTTGGAGGCTCTGTTTAAGGGCTATCCGACAACTCCAAGTAGCCGATCATCTCGCTCTACTGCCAGATAAACAATTGCATGCCCTTACGAAACAAGAACAACATCGATTTTGCAGTTTCAAGGGGAAAAAAGTAGATAACACTTGATTCAGTTGATTGTGGTTTCCATATACATGCATCCATGCGTAGCTTTTTGTGAATAACTTGCGACTGTTTGGATAATTTTTTNNA

Protein Sequence

Location information (JBrowse)

Scaffold	Start	End	Strand
Scaffold00145	178912	183224	+

Gene family

Gene family	subfamily
Protein Kinases Family	PPC:2.1.2

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID
--	--	--	--	--

Gene Ontology

biological_process

GO:0006468 protein phosphorylation

GO:0009966 regulation of signal transduction

molecular_function

GO:0004672 protein kinase activity

GO:0004674 protein serine/threonine kinase activity

GO:0005515 protein binding

GO:0005524 ATP binding

GO:0016772 transferase activity, transferring phosphorus-containing groups

Pfam domain

Protein	Pfam accession	Pfam name	Alignment start	Alignment end	E-value
Glyur000145s00010146.1	PF12796.2	Ank_2	42	130	3.10E-18
Glyur000145s00010146.1	PF00069.20	Pkinase	173	409	1.50E-54

Expression pattern

SRP053019

SRA Experiment	Description	TPM
SRR1783599	control	2.528
SRR1783600	control	2.531
SRR1783602	moderate drought stress	3.605
SRR1811619	moderate drought stress	3.636

DRP000996

SRA Experiment	Description	TPM
DRR006519	Root Summer glycyrrhizin high producing strain	5.686
DRR006520	Root Summer glycyrrhizin high producing strain	5.502
DRR006521	Root Winter glycyrrhizin high producing strain	38.097
DRR006522	Root Winter glycyrrhizin high producing strain	36.980
DRR006523	Root Summer glycyrrhizin low producing strain	2.362
DRR006524	Root Summer glycyrrhizin low producing strain	2.392
DRR006525	Leaf Summer glycyrrhizin high producing strain	16.834
DRR006526	Leaf Summer glycyrrhizin high producing strain	17.936

SRP065514

SRA Experiment	Description	TPM
SRR2867873	Salt Stress (root)	10.574
SRR2868004	Drought Stress (root)	19.143
SRR2967015	Control (root)	24.356

SRP215420

SRA Experiment	Description	TPM
SRR9715738	Leaf	21.062
SRR9715740	Leaf	19.572
SRR9715741	Leaf	19.060
SRR9715739	Root	2.025
SRR9715742	Root	5.926
SRR9715743	Root	6.097

SRP188776

SRA Experiment	Description	TPM
SRR8749027	MeJA induced 9h	12.961
SRR8749028	MeJA induced 9h	16.701
SRR8749029	MeJA induced 9h	13.385
SRR8749030	Uninduced	17.032
SRR8749031	Uninduced	9.953
SRR8749032	Uninduced	10.260

SRP175571

SRA Experiment	Description	TPM
SRR8400026	NaCl treatment - Root	13.044
SRR8400027	Control - Root	13.319