Gene detail

Gene detail information of Glyur000145s00010145.1

Functional Annotation

Database	Orthologs	E value	Annotation
TAIR	AT2G30920.1	2.00E-92	coenzyme Q 3
NR	XP_003617468.1	6.44E-149	Hexaprenyldihydroxybenzoate methyltransferase [Medicago truncatula]
COG	YP_916372.1	9.00E-69	3-demethylubiquinone-9 3-methyltransferase [Paracoccus denitrificans PD1222]
Swissprot	tr\|O49354\|COQ3_ARATH	5.00E-113	Hexaprenyldihydroxybenzoate methyltransferase, mitochondrial (Precursor)
trEMBL	tr\|G7K3E9\|G7K3E9_MEDTR	2.00E-149	3-demethylubiquinone-9 3-methyltransferase {ECO:0000313\|EMBL:AET00427.1}

Sequence

Transcript Sequence

>Glyur000145s00010145.1
CGAAACGAGTGTGGGAATTAGTGGGAACTGGGAAGGGCCGAATGGGCTAAAACAAACACACTGCACATCNCTGGAATAACTTAACTGGGTTACCCGTTTCCCTTGTTCGGGTCATACTAGGAGCTCCGACAGAGTCTGAAAGAAGGAAGTAACCATGAGGCTCTCCAACCATCTCCGATACCGGAACGGCATCACCATCCACCGCATCCTCCATAACCGGTTTCGGCCTCTCTTCAACGCCAAGTGCTTCTCCTCCGACGCTTCTCCATCGCCTCAACTCAAACAACAGCCTTCGCCTCCCTCCTCCTTGAACCGCAATGAGCTCGCCAAGTTCGCCGCCATTGCCGATACCTGGTGGGATTCTGAAGGCCCTTTTAAACCNTTGCATGTGATGAATCCTACAAGACTTGCTTTCATCCGCTCTGCACTCTGTCGACATTTCAAGAAGGATCCTTACAGTGCTAAACCCCTTGAAGGACTTAAAATTGTTGATGTAGGTTGTGGAGGTGGAATTCTTTCCGAGCCATTAGCTCGAATGGGAGCTACTGTGACGGGGGTTGATGCTGTAGAAAAGAATATCAACATTGCTCGACTTCATGCTGTGATTGAGCACGTGGCAGATCCTGCAGAGTTCTGCAAATCTCTGGCAGCATTAACGATTCCGGATGGAGCTACCGTCATATCAACAATTAATCGTTCCATGAGAGCCTATGCAACTGCCATTGTCGCCGCAGAATACATCCTCCGCTGGCTTCCAACAGGCACACACGAGTGGTCCAAATTTCTGACTCCAGAGGAACTAGTCCTGATTCTGCAACGCGCCGGTATCAACGTGGAGGAGATGGCAGGATTTGTGTATAACCCGGTAACAGGGAGATGGTCTTTATCGGACGACATCAGCAAAAATGGGGTGAGGTCAGGGAGAGGGGCAGAGTTTTCTGAGGGTAATGGAGGTGCGTTTGGATTGGGTCAAAGGTTGTCCTTGCCAGAGTTGAAAACCCGGTCTGCGGTTAATCTCGTGCTTCCAGCGATACCTTGCGTCCCCGNACATGAGAACGAGGGACCCTGGAGTGAGCAAAACAGGAACGGGAACAGGTTGGGGTTGGGAGTGGGAGTGGAGGGGAGTGAAGTGCATGACGCAGGAGGATTGGAGGGAGAGGATGGCGATGCCGTCGTCGAAGCGGAGGAGGTCGACGTGGGGGCAGATGCCCTCGCCTGGCTGGTAGACGTTGACGATCATTTGGTCGAAGAGGGGTTGTCGGTGGAGAGGGAAGTGTGTGTTGTTGTGGTGGTGTTGGAGGGAGCGGCGAATGGAGCGGGAGAGGTGGAGGGCCCAGAGAGGGAGGTGTTGGAGGCCGAAGCGCATGGCCTGATTGGTGGATGGCGAGGAGTGAGGGAACCAGTTGTCGGCTTCGATGGCGGAGAGGATGGAGGATTGTCGGTGAGGAGGGAGGAAGTCCCTGCACACCCACAGCCCCTTCACTTCCTCCACACACTCCCACTCCCAATCCGAATCGGAATCGGAATCTTCACCGTCGCTGTCATCATCGGAGGATGA

Protein Sequence

Location information (JBrowse)

Scaffold	Start	End	Strand
Scaffold00145	169374	173728	-

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID
K00591	COQ3	EC:2.1.1.114 2.1.1.64	Ubiquinone and other terpenoid-quinone biosynthesis	map00130

Gene Ontology

biological_process
GO:0006744 ubiquinone biosynthetic process

molecular_function
GO:0008425 2-polyprenyl-6-methoxy-1,4-benzoquinone methyltransferase activity

Pfam domain

Protein	Pfam accession	Pfam name	Alignment start	Alignment end	E-value
Glyur000145s00010145.1	PF13489.1	Methyltransf_23	104	229	3.70E-14

Expression pattern

SRP053019

SRA Experiment	Description	TPM
SRR1783599	control	20.138
SRR1783600	control	20.258
SRR1783602	moderate drought stress	36.009
SRR1811619	moderate drought stress	36.259

DRP000996

SRA Experiment	Description	TPM
DRR006519	Root Summer glycyrrhizin high producing strain	16.771
DRR006520	Root Summer glycyrrhizin high producing strain	16.556
DRR006521	Root Winter glycyrrhizin high producing strain	45.514
DRR006522	Root Winter glycyrrhizin high producing strain	45.193
DRR006523	Root Summer glycyrrhizin low producing strain	19.668
DRR006524	Root Summer glycyrrhizin low producing strain	22.057
DRR006525	Leaf Summer glycyrrhizin high producing strain	11.695
DRR006526	Leaf Summer glycyrrhizin high producing strain	11.485

SRP065514

SRA Experiment	Description	TPM
SRR2867873	Salt Stress (root)	7.419
SRR2868004	Drought Stress (root)	11.630
SRR2967015	Control (root)	12.506

SRP215420

SRA Experiment	Description	TPM
SRR9715738	Leaf	10.388
SRR9715740	Leaf	8.432
SRR9715741	Leaf	8.558
SRR9715739	Root	6.925
SRR9715742	Root	7.748
SRR9715743	Root	5.806

SRP188776

SRA Experiment	Description	TPM
SRR8749027	MeJA induced 9h	19.834
SRR8749028	MeJA induced 9h	9.372
SRR8749029	MeJA induced 9h	15.699
SRR8749030	Uninduced	8.122
SRR8749031	Uninduced	5.285
SRR8749032	Uninduced	9.538

SRP175571

SRA Experiment	Description	TPM
SRR8400026	NaCl treatment - Root	10.148
SRR8400027	Control - Root	8.200