Gene detail

Gene detail information of Glyur000145s00010136

Functional Annotation

Database	Orthologs	E value	Annotation
TAIR	AT1G06460.1	1.00E-47	alpha-crystallin domain 32.1
NR	XP_004491356.1	1.04E-147	PREDICTED: uncharacterized protein LOC101488254 [Cicer arietinum]
COG	YP_007550788.1	1.00E-14	heat shock protein 17 [Azoarcus sp. KH32C]
Swissprot	tr\|P19244\|HSP41_PEA	8.00E-08	22.7 kDa class IV heat shock protein (Precursor)
trEMBL	tr\|G7K3F3\|G7K3F3_MEDTR	1.00E-142	Peroxisomal small heat shock protein {ECO:0000313\|EMBL:AET00431.1}

Sequence

Transcript Sequence

>Glyur000145s00010136.1
GATCCTCTCAGAGTCTCAGTACCACATCCTGCATTATCTTTTTAGCTCAAGTTTGTTTAGTAGAAGAAAATGGAGAGTGACTTGGTGAGGCGCAGNATTAATATGATTGCAGCCCACTTTGCACCCAGTGATGAGATTTCTATTTCTACTACCCATGTTCTGCCTATGAACTGCAGTGGTAGTCTGAACTCTGTGCTCCGGAGATGTGATAATAAGGTATATTTTGCACGCCAAGCATCTTCTTCCTTTGGTTACTTTATGAGGCAGACTTCAGGTGAAGAGGGTGACTCAACTTCCTTTAATGCTCCTAAAACCAATGGTGCTAAATTTGAAGGTGCTTCTAATGCAAGAGCACCATGTTTTGCTAGACCTGCAAGGACAGAATCAGCGTTCTCAAATTCATTTGTCCAACCAAAGGTCCAGGACTGTGATTATAGTACACTTGAGCCCCCTACGTTTGCTAGGCCAAGCAGAAAGACTAGACAAAGATGCCAGTTAAATAATGAGAAAAAAACACGCTGTTCTGAAATTGGAAATGAGTGGTCCCCTAGAATGGATGTTGCAGAATCAGAAGGCAAATATGTTATCATGGTTGAAGTTCCAGGTGTTAGTATCAGTGACATAAGAGTGGAGGTTGATGATCAAAAGTTGTCTGTCAAGGGTAGACGCTCTACTAGCACTTGGACAATAGCAGGAAGTCCAAATGCTTCATTTTCTTCATATCACAAGAGGGAGATACTATATGGACCATACGAGGTGGTCTGGCCACTTCCTGCTGGTGTGAACAAGGATAGTATATCAGCTGAATTTTTGGATGGATTTTTACAAATTATAATTCCTAAAGTTTGAGTATGCATTTGCCTTATCATAGATGTAGCGGAAATGGGCGATGTTCTGCGTGGAAATCAGTTGTTTCTTCTGTATGAGCTATGTCCAGTCGTACATATATAATATAATAATGTAAATTTAATGAACAGATGATGGATAATTTTGATGTCATATACATACAACAATATATTGAACAGAAAAATGTCTACATATGTATTGGGT

Protein Sequence

Location information (JBrowse)

Scaffold	Start	End	Strand
Scaffold00145	127687	130745	+

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID
--	--	--	--	--

Gene Ontology

Not hits found.

Not hits found.

Pfam domain

Protein	Pfam accession	Pfam name	Alignment start	Alignment end	E-value
Glyur000145s00010136.1	PF00011.16	HSP20	163	258	1.50E-13

Expression pattern

SRP053019

SRA Experiment	Description	TPM
SRR1783599	control	5.874
SRR1783600	control	5.982
SRR1783602	moderate drought stress	9.166
SRR1811619	moderate drought stress	9.105

DRP000996

SRA Experiment	Description	TPM
DRR006519	Root Summer glycyrrhizin high producing strain	14.000
DRR006520	Root Summer glycyrrhizin high producing strain	13.484
DRR006521	Root Winter glycyrrhizin high producing strain	44.524
DRR006522	Root Winter glycyrrhizin high producing strain	44.236
DRR006523	Root Summer glycyrrhizin low producing strain	41.049
DRR006524	Root Summer glycyrrhizin low producing strain	40.835
DRR006525	Leaf Summer glycyrrhizin high producing strain	190.203
DRR006526	Leaf Summer glycyrrhizin high producing strain	189.099

SRP065514

SRA Experiment	Description	TPM
SRR2867873	Salt Stress (root)	0.273
SRR2868004	Drought Stress (root)	0.141
SRR2967015	Control (root)	1.670

SRP215420

SRA Experiment	Description	TPM
SRR9715738	Leaf	15.298
SRR9715740	Leaf	104.975
SRR9715741	Leaf	20.428
SRR9715739	Root	1.007
SRR9715742	Root	1.935
SRR9715743	Root	2.340

SRP188776

SRA Experiment	Description	TPM
SRR8749027	MeJA induced 9h	0.203
SRR8749028	MeJA induced 9h	0.142
SRR8749029	MeJA induced 9h	0.173
SRR8749030	Uninduced	0.362
SRR8749031	Uninduced	0.000
SRR8749032	Uninduced	0.054

SRP175571

SRA Experiment	Description	TPM
SRR8400026	NaCl treatment - Root	2.422
SRR8400027	Control - Root	4.026